PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2gu0a1  (   2 )    AeLACFVsfsltedkVvWypInkkAVqtMlcakvekdqrsnyydTilygv
d2r7ja2  (   2 )    aeLaCFCyphlendsykFipFnnlAIkaMltakvdkkdmdkfydSiiygi
                      333 bbbb      bbbb  aaaaaaa      333    bb     b

                             60        70        80        90        100 
d2gu0a1  (  52 )    APPPefrnrFktner-ygldyesdqYteLVnlLAdTLnmvsmptekFqfd
d2r7ja2  (  52 )    APPPqfkkrYntndnsrgmnFetimFtkVAmLICeALnslkvtqanv-sn
                    b  333333              aaaaaaaaaaaaaaa            

                             110       120       130       140 
d2gu0a1  ( 101 )    iVktvVqvrhLenLlcrikdvndiLnanvklrvkaVmiACnlv
d2r7ja2  ( 101 )    vLsrvVsirhLenLVirkenpqdiLfhskdlLlksTliAIgqs
                           aaaaaaaaaaa          aaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2gu0a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gu0a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Rotavirus c [TaxId: 10943]		view
d2r7ja2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2r7ja2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Rotavirus NSP2 fragment, N-terminal domain	Rotavirus NSP2 fragment, N-terminal domain	Simian 11 rotavirus [TaxId: 10923]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	E	L	A	C	F	V	S	F	S	L	T	E	D	K	V	V	W	Y	P	I	N	K	K	A	V	Q	T	M	L	C	A	K	V	E	K	D	Q	R	S	N	Y	Y	D	T	I	L	Y	G	V	A	P	P	P	E	F	R	N	R	F	K	T	N	E	R	-	Y	G	L	D	Y	E	S	D	Q	Y	T	E	L	V	N	L	L	A	D	T	L	N	M	V	S	M	P	T	E	K	F	Q	F	D	I	V	K	T	V	V	Q	V	R	H	L	E	N	L	L	C	R	I	K	D	V	N	D	I	L	N	A	N	V	K	L	R	V	K	A	V	M	I	A	C	N	L	V
A	E	L	A	C	F	C	Y	P	H	L	E	N	D	S	Y	K	F	I	P	F	N	N	L	A	I	K	A	M	L	T	A	K	V	D	K	K	D	M	D	K	F	Y	D	S	I	I	Y	G	I	A	P	P	P	Q	F	K	K	R	Y	N	T	N	D	N	S	R	G	M	N	F	E	T	I	M	F	T	K	V	A	M	L	I	C	E	A	L	N	S	L	K	V	T	Q	A	N	V	-	S	N	V	L	S	R	V	V	S	I	R	H	L	E	N	L	V	I	R	K	E	N	P	Q	D	I	L	F	H	S	K	D	L	L	L	K	S	T	L	I	A	I	G	Q	S

Member	Chain	UniProtKB	GO term
d2r7ja2	A	Q03243	GO:0000166
d2r7ja2	A	Q03243	GO:0003723
d2r7ja2	A	Q03243	GO:0004550
d2r7ja2	A	Q03243	GO:0005524
d2r7ja2	A	Q03243	GO:0016787
d2r7ja2	A	Q03243	GO:0016817
d2r7ja2	A	Q03243	GO:0017111
d2r7ja2	A	Q03243	GO:0019079
d2r7ja2	A	Q03243	GO:0030430
d2r7ja2	A	Q03243	GO:0046872
d2r7ja2	A	Q03243	GO:0000166
d2r7ja2	A	Q03243	GO:0003723
d2r7ja2	A	Q03243	GO:0004550
d2r7ja2	A	Q03243	GO:0005524
d2r7ja2	A	Q03243	GO:0016787
d2r7ja2	A	Q03243	GO:0016817
d2r7ja2	A	Q03243	GO:0017111
d2r7ja2	A	Q03243	GO:0019079
d2r7ja2	A	Q03243	GO:0030430
d2r7ja2	A	Q03243	GO:0046872

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A	E	L	A	C	F	C	Y	P	H	L	E	N	D	S	Y	K	F	I	P	F	N	N	L	A	I	K	A	M	L	T	A	K	V	D	K	K	D	M	D	K	F	Y	D	S	I	I	Y	G	I	A	P	P	P	Q	F	K	K	R	Y	N	T	N	D	N	S	R	G	M	N	F	E	T	I	M	F	T	K	V	A	M	L	I	C	E	A	L	N	S	L	K	V	T	Q	A	N	V	-	S	N	V	L	S	R	V	V	S	I	R	H	L	E	N	L	V	I	R	K	E	N	P	Q	D	I	L	F	H	S	K	D	L	L	L	K	S	T	L	I	A	I	G	Q	S

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A	E	L	A	C	F	C	Y	P	H	L	E	N	D	S	Y	K	F	I	P	F	N	N	L	A	I	K	A	M	L	T	A	K	V	D	K	K	D	M	D	K	F	Y	D	S	I	I	Y	G	I	A	P	P	P	Q	F	K	K	R	Y	N	T	N	D	N	S	R	G	M	N	F	E	T	I	M	F	T	K	V	A	M	L	I	C	E	A	L	N	S	L	K	V	T	Q	A	N	V	-	S	N	V	L	S	R	V	V	S	I	R	H	L	E	N	L	V	I	R	K	E	N	P	Q	D	I	L	F	H	S	K	D	L	L	L	K	S	T	L	I	A	I	G	Q	S

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A	E	L	A	C	F	V	S	F	S	L	T	E	D	K	V	V	W	Y	P	I	N	K	K	A	V	Q	T	M	L	C	A	K	V	E	K	D	Q	R	S	N	Y	Y	D	T	I	L	Y	G	V	A	P	P	P	E	F	R	N	R	F	K	T	N	E	R	-	Y	G	L	D	Y	E	S	D	Q	Y	T	E	L	V	N	L	L	A	D	T	L	N	M	V	S	M	P	T	E	K	F	Q	F	D	I	V	K	T	V	V	Q	V	R	H	L	E	N	L	L	C	R	I	K	D	V	N	D	I	L	N	A	N	V	K	L	R	V	K	A	V	M	I	A	C	N	L	V
A	E	L	A	C	F	C	Y	P	H	L	E	N	D	S	Y	K	F	I	P	F	N	N	L	A	I	K	A	M	L	T	A	K	V	D	K	K	D	M	D	K	F	Y	D	S	I	I	Y	G	I	A	P	P	P	Q	F	K	K	R	Y	N	T	N	D	N	S	R	G	M	N	F	E	T	I	M	F	T	K	V	A	M	L	I	C	E	A	L	N	S	L	K	V	T	Q	A	N	V	-	S	N	V	L	S	R	V	V	S	I	R	H	L	E	N	L	V	I	R	K	E	N	P	Q	D	I	L	F	H	S	K	D	L	L	L	K	S	T	L	I	A	I	G	Q	S