PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1gxja-  ( 498 )    gfsrAVraVfeek--erFpgLvdVVsnlievdekyslAVsvLLggtaqnI
d3l51b1  ( 595 )    g--kvldaIiqEkksgrIpgIygrLgdlgaidekydiAissCC-haldyI
                       aaaaaaaa         bbbb        333aaaaaaa  3333 b

                             60        70        80        90        100 
d1gxja-  ( 546 )    VVrnvdtakaIvefLkqneAgrvtIlpldlidG-sfnrisgLenerGfvg
d3l51b1  ( 642 )    VVdsidtaqeCvnfLkkhnigiatFiGLdktvwakkskiqTpen----Tp
                    bb  aaaaaaaaaaaaa       bbb              333      

                             110       120       130       140       150 
d1gxja-  ( 595 )    YAvdlVkFp-sdLevLgGfLFgnSVVVetlddAirMkkkyrLntrIATld
d3l51b1  ( 690 )    RLfdlVkvkneeirqAFyfALrdTLVAnnldqAtrVAyqrdrrWrVVTlq
                     aaaa        aaaaaaaa   bbb  aaaaaaaa        bbb  

                             160   
d1gxja-  ( 644 )    GelIsgrgaitggre
d3l51b1  ( 740 )    Gqiieqsgt-sgg  
                      bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1gxja- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1gxja- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Smc hinge domain	Smc hinge domain	Thermotoga maritima [TaxId: 2336]		view
d3l51b1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3l51b1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Mouse (Mus musculus) [TaxId: 10090]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	F	S	R	A	V	R	A	V	F	E	E	K	-	-	E	R	F	P	G	L	V	D	V	V	S	N	L	I	E	V	D	E	K	Y	S	L	A	V	S	V	L	L	G	G	T	A	Q	N	I	V	V	R	N	V	D	T	A	K	A	I	V	E	F	L	K	Q	N	E	A	G	R	V	T	I	L	P	L	D	L	I	D	G	-	S	F	N	R	I	S	G	L	E	N	E	R	G	F	V	G	Y	A	V	D	L	V	K	F	P	-	S	D	L	E	V	L	G	G	F	L	F	G	N	S	V	V	V	E	T	L	D	D	A	I	R	M	K	K	K	Y	R	L	N	T	R	I	A	T	L	D	G	E	L	I	S	G	R	G	A	I	T	G	G	R	E
G	-	-	K	V	L	D	A	I	I	Q	E	K	K	S	G	R	I	P	G	I	Y	G	R	L	G	D	L	G	A	I	D	E	K	Y	D	I	A	I	S	S	C	C	-	H	A	L	D	Y	I	V	V	D	S	I	D	T	A	Q	E	C	V	N	F	L	K	K	H	N	I	G	I	A	T	F	I	G	L	D	K	T	V	W	A	K	K	S	K	I	Q	T	P	E	N	-	-	-	-	T	P	R	L	F	D	L	V	K	V	K	N	E	E	I	R	Q	A	F	Y	F	A	L	R	D	T	L	V	A	N	N	L	D	Q	A	T	R	V	A	Y	Q	R	D	R	R	W	R	V	V	T	L	Q	G	Q	I	I	E	Q	S	G	T	-	S	G	G	-	-

Member	Chain	UniProtKB	GO term
d1gxja_	A	Q9X0R4	GO:0005524
d1gxja_	A	Q9X0R4	GO:0005694
d1gxja_	A	Q9X0R4	GO:0051276

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G	F	S	R	A	V	R	A	V	F	E	E	K	-	-	E	R	F	P	G	L	V	D	V	V	S	N	L	I	E	V	D	E	K	Y	S	L	A	V	S	V	L	L	G	G	T	A	Q	N	I	V	V	R	N	V	D	T	A	K	A	I	V	E	F	L	K	Q	N	E	A	G	R	V	T	I	L	P	L	D	L	I	D	G	-	S	F	N	R	I	S	G	L	E	N	E	R	G	F	V	G	Y	A	V	D	L	V	K	F	P	-	S	D	L	E	V	L	G	G	F	L	F	G	N	S	V	V	V	E	T	L	D	D	A	I	R	M	K	K	K	Y	R	L	N	T	R	I	A	T	L	D	G	E	L	I	S	G	R	G	A	I	T	G	G	R	E
G	-	-	K	V	L	D	A	I	I	Q	E	K	K	S	G	R	I	P	G	I	Y	G	R	L	G	D	L	G	A	I	D	E	K	Y	D	I	A	I	S	S	C	C	-	H	A	L	D	Y	I	V	V	D	S	I	D	T	A	Q	E	C	V	N	F	L	K	K	H	N	I	G	I	A	T	F	I	G	L	D	K	T	V	W	A	K	K	S	K	I	Q	T	P	E	N	-	-	-	-	T	P	R	L	F	D	L	V	K	V	K	N	E	E	I	R	Q	A	F	Y	F	A	L	R	D	T	L	V	A	N	N	L	D	Q	A	T	R	V	A	Y	Q	R	D	R	R	W	R	V	V	T	L	Q	G	Q	I	I	E	Q	S	G	T	-	S	G	G	-	-

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G	F	S	R	A	V	R	A	V	F	E	E	K	-	-	E	R	F	P	G	L	V	D	V	V	S	N	L	I	E	V	D	E	K	Y	S	L	A	V	S	V	L	L	G	G	T	A	Q	N	I	V	V	R	N	V	D	T	A	K	A	I	V	E	F	L	K	Q	N	E	A	G	R	V	T	I	L	P	L	D	L	I	D	G	-	S	F	N	R	I	S	G	L	E	N	E	R	G	F	V	G	Y	A	V	D	L	V	K	F	P	-	S	D	L	E	V	L	G	G	F	L	F	G	N	S	V	V	V	E	T	L	D	D	A	I	R	M	K	K	K	Y	R	L	N	T	R	I	A	T	L	D	G	E	L	I	S	G	R	G	A	I	T	G	G	R	E
G	-	-	K	V	L	D	A	I	I	Q	E	K	K	S	G	R	I	P	G	I	Y	G	R	L	G	D	L	G	A	I	D	E	K	Y	D	I	A	I	S	S	C	C	-	H	A	L	D	Y	I	V	V	D	S	I	D	T	A	Q	E	C	V	N	F	L	K	K	H	N	I	G	I	A	T	F	I	G	L	D	K	T	V	W	A	K	K	S	K	I	Q	T	P	E	N	-	-	-	-	T	P	R	L	F	D	L	V	K	V	K	N	E	E	I	R	Q	A	F	Y	F	A	L	R	D	T	L	V	A	N	N	L	D	Q	A	T	R	V	A	Y	Q	R	D	R	R	W	R	V	V	T	L	Q	G	Q	I	I	E	Q	S	G	T	-	S	G	G	-	-

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G	F	S	R	A	V	R	A	V	F	E	E	K	-	-	E	R	F	P	G	L	V	D	V	V	S	N	L	I	E	V	D	E	K	Y	S	L	A	V	S	V	L	L	G	G	T	A	Q	N	I	V	V	R	N	V	D	T	A	K	A	I	V	E	F	L	K	Q	N	E	A	G	R	V	T	I	L	P	L	D	L	I	D	G	-	S	F	N	R	I	S	G	L	E	N	E	R	G	F	V	G	Y	A	V	D	L	V	K	F	P	-	S	D	L	E	V	L	G	G	F	L	F	G	N	S	V	V	V	E	T	L	D	D	A	I	R	M	K	K	K	Y	R	L	N	T	R	I	A	T	L	D	G	E	L	I	S	G	R	G	A	I	T	G	G	R	E
G	-	-	K	V	L	D	A	I	I	Q	E	K	K	S	G	R	I	P	G	I	Y	G	R	L	G	D	L	G	A	I	D	E	K	Y	D	I	A	I	S	S	C	C	-	H	A	L	D	Y	I	V	V	D	S	I	D	T	A	Q	E	C	V	N	F	L	K	K	H	N	I	G	I	A	T	F	I	G	L	D	K	T	V	W	A	K	K	S	K	I	Q	T	P	E	N	-	-	-	-	T	P	R	L	F	D	L	V	K	V	K	N	E	E	I	R	Q	A	F	Y	F	A	L	R	D	T	L	V	A	N	N	L	D	Q	A	T	R	V	A	Y	Q	R	D	R	R	W	R	V	V	T	L	Q	G	Q	I	I	E	Q	S	G	T	-	S	G	G	-	-