PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1j5ya2  (  68 )     ksgvsrlvaVkhapeeikeELlCVVrngGrIvDviVehpvygeirgiid
d7cv2a2  (  71 )    ntvqaqrvvaCqHgpadmkdELltLVdhgVlIkdvtVdhpvygditaslh
                        bbbbbbbb     aaaaaaaaa    bbbbbbbbb   bbbbbbbb

                             60        70        80        90        100 
d1j5ya2  ( 117 )    VsseeeVlkfvnl-eaktepll-tlsggvHlHtieapdeet--erireLk
d7cv2a2  ( 121 )    LksrkdValfckrmeesngtllstltkgvHmHtLeAeseaiLdeAiraLe
                    b  aaaaaaaaa                bbbbbbbb           aaa

                             
d1j5ya2  ( 167 )    kkgFliee 
d7cv2a2  ( 171 )    ekgyllnsf
                    a

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1j5ya2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1j5ya2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Putative transcriptional regulator TM1602, C-terminal domain	Putative transcriptional regulator TM1602, C-terminal domain	Thermotoga maritima [TaxId: 2336]		view
d7cv2a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d7cv2a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bacillus halodurans [TaxId: 272558]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	K	S	G	V	S	R	L	V	A	V	K	H	A	P	E	E	I	K	E	E	L	L	C	V	V	R	N	G	G	R	I	V	D	V	I	V	E	H	P	V	Y	G	E	I	R	G	I	I	D	V	S	S	E	E	E	V	L	K	F	V	N	L	-	E	A	K	T	E	P	L	L	-	T	L	S	G	G	V	H	L	H	T	I	E	A	P	D	E	E	T	-	-	E	R	I	R	E	L	K	K	K	G	F	L	I	E	E	-
N	T	V	Q	A	Q	R	V	V	A	C	Q	H	G	P	A	D	M	K	D	E	L	L	T	L	V	D	H	G	V	L	I	K	D	V	T	V	D	H	P	V	Y	G	D	I	T	A	S	L	H	L	K	S	R	K	D	V	A	L	F	C	K	R	M	E	E	S	N	G	T	L	L	S	T	L	T	K	G	V	H	M	H	T	L	E	A	E	S	E	A	I	L	D	E	A	I	R	A	L	E	E	K	G	Y	L	L	N	S	F

Member	Chain	UniProtKB	GO term
d1j5ya2	A	Q9X1T8	GO:0003677
d1j5ya2	A	Q9X1T8	GO:0036094
d1j5ya2	A	Q9X1T8	GO:0046872

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-	K	S	G	V	S	R	L	V	A	V	K	H	A	P	E	E	I	K	E	E	L	L	C	V	V	R	N	G	G	R	I	V	D	V	I	V	E	H	P	V	Y	G	E	I	R	G	I	I	D	V	S	S	E	E	E	V	L	K	F	V	N	L	-	E	A	K	T	E	P	L	L	-	T	L	S	G	G	V	H	L	H	T	I	E	A	P	D	E	E	T	-	-	E	R	I	R	E	L	K	K	K	G	F	L	I	E	E	-
N	T	V	Q	A	Q	R	V	V	A	C	Q	H	G	P	A	D	M	K	D	E	L	L	T	L	V	D	H	G	V	L	I	K	D	V	T	V	D	H	P	V	Y	G	D	I	T	A	S	L	H	L	K	S	R	K	D	V	A	L	F	C	K	R	M	E	E	S	N	G	T	L	L	S	T	L	T	K	G	V	H	M	H	T	L	E	A	E	S	E	A	I	L	D	E	A	I	R	A	L	E	E	K	G	Y	L	L	N	S	F

									10										20										30										40										50										60										70										80										90										100
-	K	S	G	V	S	R	L	V	A	V	K	H	A	P	E	E	I	K	E	E	L	L	C	V	V	R	N	G	G	R	I	V	D	V	I	V	E	H	P	V	Y	G	E	I	R	G	I	I	D	V	S	S	E	E	E	V	L	K	F	V	N	L	-	E	A	K	T	E	P	L	L	-	T	L	S	G	G	V	H	L	H	T	I	E	A	P	D	E	E	T	-	-	E	R	I	R	E	L	K	K	K	G	F	L	I	E	E	-
N	T	V	Q	A	Q	R	V	V	A	C	Q	H	G	P	A	D	M	K	D	E	L	L	T	L	V	D	H	G	V	L	I	K	D	V	T	V	D	H	P	V	Y	G	D	I	T	A	S	L	H	L	K	S	R	K	D	V	A	L	F	C	K	R	M	E	E	S	N	G	T	L	L	S	T	L	T	K	G	V	H	M	H	T	L	E	A	E	S	E	A	I	L	D	E	A	I	R	A	L	E	E	K	G	Y	L	L	N	S	F

									10										20										30										40										50										60										70										80										90										100
-	K	S	G	V	S	R	L	V	A	V	K	H	A	P	E	E	I	K	E	E	L	L	C	V	V	R	N	G	G	R	I	V	D	V	I	V	E	H	P	V	Y	G	E	I	R	G	I	I	D	V	S	S	E	E	E	V	L	K	F	V	N	L	-	E	A	K	T	E	P	L	L	-	T	L	S	G	G	V	H	L	H	T	I	E	A	P	D	E	E	T	-	-	E	R	I	R	E	L	K	K	K	G	F	L	I	E	E	-
N	T	V	Q	A	Q	R	V	V	A	C	Q	H	G	P	A	D	M	K	D	E	L	L	T	L	V	D	H	G	V	L	I	K	D	V	T	V	D	H	P	V	Y	G	D	I	T	A	S	L	H	L	K	S	R	K	D	V	A	L	F	C	K	R	M	E	E	S	N	G	T	L	L	S	T	L	T	K	G	V	H	M	H	T	L	E	A	E	S	E	A	I	L	D	E	A	I	R	A	L	E	E	K	G	Y	L	L	N	S	F