PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ln4a1  (   1 )    mdlstkqkqhLkglAhplkpvvlLgsngltegvlaeIeqaLehhELIkVk
d1rq8a-  (   1 )    m-ltgkqkrylrslAhnidpiFqigkgginenmikqiddtlenreliKvh
                        aaaaaaaaaa       bbb      aaaaaaaaaaaaa  bbbbb

                             60        70        80        90       
d1ln4a1  (  51 )    IatedretktliVeaIvreTgACnVqvigktLVLYrptke-rkislpl
d1rq8a-  (  50 )    vlqnnfddKkelAetlseatrSelvqvigsmiviYReskenkeielp 
                    b    aaaaaaaaaaaaaa   bbbbb   bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ln4a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ln4a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	hypothetical protein YhbY	YhbY-like	Escherichia coli [TaxId: 562]		view
d1rq8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1rq8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein SAV1595	YhbY-like	Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	D	L	S	T	K	Q	K	Q	H	L	K	G	L	A	H	P	L	K	P	V	V	L	L	G	S	N	G	L	T	E	G	V	L	A	E	I	E	Q	A	L	E	H	H	E	L	I	K	V	K	I	A	T	E	D	R	E	T	K	T	L	I	V	E	A	I	V	R	E	T	G	A	C	N	V	Q	V	I	G	K	T	L	V	L	Y	R	P	T	K	E	-	R	K	I	S	L	P	L
M	-	L	T	G	K	Q	K	R	Y	L	R	S	L	A	H	N	I	D	P	I	F	Q	I	G	K	G	G	I	N	E	N	M	I	K	Q	I	D	D	T	L	E	N	R	E	L	I	K	V	H	V	L	Q	N	N	F	D	D	K	K	E	L	A	E	T	L	S	E	A	T	R	S	E	L	V	Q	V	I	G	S	M	I	V	I	Y	R	E	S	K	E	N	K	E	I	E	L	P	-

Member	Chain	UniProtKB	GO term
d1rq8a_	A	A0A0H3JRP0	GO:0003723

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M	D	L	S	T	K	Q	K	Q	H	L	K	G	L	A	H	P	L	K	P	V	V	L	L	G	S	N	G	L	T	E	G	V	L	A	E	I	E	Q	A	L	E	H	H	E	L	I	K	V	K	I	A	T	E	D	R	E	T	K	T	L	I	V	E	A	I	V	R	E	T	G	A	C	N	V	Q	V	I	G	K	T	L	V	L	Y	R	P	T	K	E	-	R	K	I	S	L	P	L
M	-	L	T	G	K	Q	K	R	Y	L	R	S	L	A	H	N	I	D	P	I	F	Q	I	G	K	G	G	I	N	E	N	M	I	K	Q	I	D	D	T	L	E	N	R	E	L	I	K	V	H	V	L	Q	N	N	F	D	D	K	K	E	L	A	E	T	L	S	E	A	T	R	S	E	L	V	Q	V	I	G	S	M	I	V	I	Y	R	E	S	K	E	N	K	E	I	E	L	P	-

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M	D	L	S	T	K	Q	K	Q	H	L	K	G	L	A	H	P	L	K	P	V	V	L	L	G	S	N	G	L	T	E	G	V	L	A	E	I	E	Q	A	L	E	H	H	E	L	I	K	V	K	I	A	T	E	D	R	E	T	K	T	L	I	V	E	A	I	V	R	E	T	G	A	C	N	V	Q	V	I	G	K	T	L	V	L	Y	R	P	T	K	E	-	R	K	I	S	L	P	L
M	-	L	T	G	K	Q	K	R	Y	L	R	S	L	A	H	N	I	D	P	I	F	Q	I	G	K	G	G	I	N	E	N	M	I	K	Q	I	D	D	T	L	E	N	R	E	L	I	K	V	H	V	L	Q	N	N	F	D	D	K	K	E	L	A	E	T	L	S	E	A	T	R	S	E	L	V	Q	V	I	G	S	M	I	V	I	Y	R	E	S	K	E	N	K	E	I	E	L	P	-

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M	D	L	S	T	K	Q	K	Q	H	L	K	G	L	A	H	P	L	K	P	V	V	L	L	G	S	N	G	L	T	E	G	V	L	A	E	I	E	Q	A	L	E	H	H	E	L	I	K	V	K	I	A	T	E	D	R	E	T	K	T	L	I	V	E	A	I	V	R	E	T	G	A	C	N	V	Q	V	I	G	K	T	L	V	L	Y	R	P	T	K	E	-	R	K	I	S	L	P	L
M	-	L	T	G	K	Q	K	R	Y	L	R	S	L	A	H	N	I	D	P	I	F	Q	I	G	K	G	G	I	N	E	N	M	I	K	Q	I	D	D	T	L	E	N	R	E	L	I	K	V	H	V	L	Q	N	N	F	D	D	K	K	E	L	A	E	T	L	S	E	A	T	R	S	E	L	V	Q	V	I	G	S	M	I	V	I	Y	R	E	S	K	E	N	K	E	I	E	L	P	-