PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2gu0a2  ( 144 )    netettplTesndivyqdsyFTITkLdysnhkllplm---adeyKITInt
d2r7ja1  ( 144 )    keiettitAeggeivfqnaaFTMwkLtylehqlmpildqnfieyKVTlne
                         333     bbbb   bbbbb                 bbbbbb  

                             60        70        80        90        100 
d2gu0a2  ( 191 )    ktdIpdrnqtaFAAyIrynfnkfAAIShgkrhWrLVlhsqlmshAerldr
d2r7ja1  ( 194 )    dkpisdvhVkeLVaeLrwqynkfAvIThGkGAYrIVkyssvanHAdrVya
                         aaaaaaaaaaaaaa   bbbb      bbbbb333aaaaaaaaaa

                             110       120       130       140       150 
d2gu0a2  ( 241 )    kiksd-------kyddgdmaFVhpGWktCIgqLcggttfevAktsLysik
d2r7ja1  ( 244 )    tfksnvktgvnndfnlldqrIIwqnWyaFTssMkqgntldvCkrlLfq-k
                    aaa                    aaaaaaaaaaa    aaaa  aaa   

                             160       
d2gu0a2  ( 291 )    psktvrtatnkiesdlism
d2r7ja1  ( 293 )    m-kpfkglstdrkmdev  
                           aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2gu0a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gu0a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Rotavirus c [TaxId: 10943]		view
d2r7ja1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2r7ja1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Rotavirus NSP2 fragment, C-terminal domain	Rotavirus NSP2 fragment, C-terminal domain	Simian 11 rotavirus [TaxId: 10923]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2r7ja1	A	Q03243	GO:0000166
d2r7ja1	A	Q03243	GO:0003723
d2r7ja1	A	Q03243	GO:0004550
d2r7ja1	A	Q03243	GO:0005524
d2r7ja1	A	Q03243	GO:0016787
d2r7ja1	A	Q03243	GO:0016817
d2r7ja1	A	Q03243	GO:0017111
d2r7ja1	A	Q03243	GO:0019079
d2r7ja1	A	Q03243	GO:0030430
d2r7ja1	A	Q03243	GO:0046872
d2r7ja1	A	Q03243	GO:0000166
d2r7ja1	A	Q03243	GO:0003723
d2r7ja1	A	Q03243	GO:0004550
d2r7ja1	A	Q03243	GO:0005524
d2r7ja1	A	Q03243	GO:0016787
d2r7ja1	A	Q03243	GO:0016817
d2r7ja1	A	Q03243	GO:0017111
d2r7ja1	A	Q03243	GO:0019079
d2r7ja1	A	Q03243	GO:0030430
d2r7ja1	A	Q03243	GO:0046872

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