PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1lr0a1  (   3 )    alallsdttqqaladevgsevtg---slddlivnlVsqqWrrppsarngs
d1u07a-  ( 150 )                      asgpralsrnqpqyparAqa------lriegq
d3qdpa-  ( 334 )                gadinnYagqI---saIesF-ydAssyag-------kt
                                                                      

                             60        70        80        90        100 
d1lr0a1  (  54 )    VeVliel-pdgtItnAsvsrssgdkpFdssAvaAVrnVgripeqqlprat
d1u07a-  ( 176 )    VkVkFdVtpdGrVdnvqilsakpanmFereVknAMrrW-rYep-------
d3qdpa-  ( 363 )    ÇtLrIkLapdGmlldIkpegg--dpaLçqaAlaaAkla-kIpkPps--qa
                    bbbbbb        bbbbbb       aaaaaaaa               

                             110       120 
d1lr0a1  ( 105 )    fdslyrqrriiFk-pedLsl   
d1u07a-  ( 218 )    -gkpgsgivvnilFkingtteiq
d3qdpa-  ( 408 )    VyevF-napldfk-p        
                           bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1lr0a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1lr0a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	TolA	TolA	Pseudomonas aeruginosa [TaxId: 287]	view
d1u07a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1u07a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	TonB	TonB	Escherichia coli [TaxId: 562]	view
d3qdpa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3qdpa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	TolA	Escherichia coli [TaxId: 83333]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120
A	L	A	L	L	S	D	T	T	Q	Q	A	L	A	D	E	V	G	S	E	V	T	G	-	-	-	S	L	D	D	L	I	V	N	L	V	S	Q	Q	W	R	R	P	P	S	A	R	N	G	S	V	E	V	L	I	E	L	-	P	D	G	T	I	T	N	A	S	V	S	R	S	S	G	D	K	P	F	D	S	S	A	V	A	A	V	R	N	V	G	R	I	P	E	Q	Q	L	P	R	A	T	F	D	S	L	Y	R	Q	R	R	I	I	F	K	-	P	E	D	L	S	L	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	S	G	P	R	A	L	S	R	N	Q	P	Q	Y	P	A	R	A	Q	A	-	-	-	-	-	-	L	R	I	E	G	Q	V	K	V	K	F	D	V	T	P	D	G	R	V	D	N	V	Q	I	L	S	A	K	P	A	N	M	F	E	R	E	V	K	N	A	M	R	R	W	-	R	Y	E	P	-	-	-	-	-	-	-	-	G	K	P	G	S	G	I	V	V	N	I	L	F	K	I	N	G	T	T	E	I	Q
-	-	-	-	-	-	-	-	-	-	-	-	G	A	D	I	N	N	Y	A	G	Q	I	-	-	-	S	A	I	E	S	F	-	Y	D	A	S	S	Y	A	G	-	-	-	-	-	-	-	K	T	C	T	L	R	I	K	L	A	P	D	G	M	L	L	D	I	K	P	E	G	G	-	-	D	P	A	L	C	Q	A	A	L	A	A	A	K	L	A	-	K	I	P	K	P	P	S	-	-	Q	A	V	Y	E	V	F	-	N	A	P	L	D	F	K	-	P	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1u07a_	A	P02929	GO:0015891
d1u07a_	A	P02929	GO:0030288
d1u07a_	A	P02929	GO:0031992
d1u07a_	A	P02929	GO:0055085

									10										20										30										40										50										60										70										80										90										100										110										120
A	L	A	L	L	S	D	T	T	Q	Q	A	L	A	D	E	V	G	S	E	V	T	G	-	-	-	S	L	D	D	L	I	V	N	L	V	S	Q	Q	W	R	R	P	P	S	A	R	N	G	S	V	E	V	L	I	E	L	-	P	D	G	T	I	T	N	A	S	V	S	R	S	S	G	D	K	P	F	D	S	S	A	V	A	A	V	R	N	V	G	R	I	P	E	Q	Q	L	P	R	A	T	F	D	S	L	Y	R	Q	R	R	I	I	F	K	-	P	E	D	L	S	L	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	S	G	P	R	A	L	S	R	N	Q	P	Q	Y	P	A	R	A	Q	A	-	-	-	-	-	-	L	R	I	E	G	Q	V	K	V	K	F	D	V	T	P	D	G	R	V	D	N	V	Q	I	L	S	A	K	P	A	N	M	F	E	R	E	V	K	N	A	M	R	R	W	-	R	Y	E	P	-	-	-	-	-	-	-	-	G	K	P	G	S	G	I	V	V	N	I	L	F	K	I	N	G	T	T	E	I	Q
-	-	-	-	-	-	-	-	-	-	-	-	G	A	D	I	N	N	Y	A	G	Q	I	-	-	-	S	A	I	E	S	F	-	Y	D	A	S	S	Y	A	G	-	-	-	-	-	-	-	K	T	C	T	L	R	I	K	L	A	P	D	G	M	L	L	D	I	K	P	E	G	G	-	-	D	P	A	L	C	Q	A	A	L	A	A	A	K	L	A	-	K	I	P	K	P	P	S	-	-	Q	A	V	Y	E	V	F	-	N	A	P	L	D	F	K	-	P	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120
A	L	A	L	L	S	D	T	T	Q	Q	A	L	A	D	E	V	G	S	E	V	T	G	-	-	-	S	L	D	D	L	I	V	N	L	V	S	Q	Q	W	R	R	P	P	S	A	R	N	G	S	V	E	V	L	I	E	L	-	P	D	G	T	I	T	N	A	S	V	S	R	S	S	G	D	K	P	F	D	S	S	A	V	A	A	V	R	N	V	G	R	I	P	E	Q	Q	L	P	R	A	T	F	D	S	L	Y	R	Q	R	R	I	I	F	K	-	P	E	D	L	S	L	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	S	G	P	R	A	L	S	R	N	Q	P	Q	Y	P	A	R	A	Q	A	-	-	-	-	-	-	L	R	I	E	G	Q	V	K	V	K	F	D	V	T	P	D	G	R	V	D	N	V	Q	I	L	S	A	K	P	A	N	M	F	E	R	E	V	K	N	A	M	R	R	W	-	R	Y	E	P	-	-	-	-	-	-	-	-	G	K	P	G	S	G	I	V	V	N	I	L	F	K	I	N	G	T	T	E	I	Q
-	-	-	-	-	-	-	-	-	-	-	-	G	A	D	I	N	N	Y	A	G	Q	I	-	-	-	S	A	I	E	S	F	-	Y	D	A	S	S	Y	A	G	-	-	-	-	-	-	-	K	T	C	T	L	R	I	K	L	A	P	D	G	M	L	L	D	I	K	P	E	G	G	-	-	D	P	A	L	C	Q	A	A	L	A	A	A	K	L	A	-	K	I	P	K	P	P	S	-	-	Q	A	V	Y	E	V	F	-	N	A	P	L	D	F	K	-	P	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120
A	L	A	L	L	S	D	T	T	Q	Q	A	L	A	D	E	V	G	S	E	V	T	G	-	-	-	S	L	D	D	L	I	V	N	L	V	S	Q	Q	W	R	R	P	P	S	A	R	N	G	S	V	E	V	L	I	E	L	-	P	D	G	T	I	T	N	A	S	V	S	R	S	S	G	D	K	P	F	D	S	S	A	V	A	A	V	R	N	V	G	R	I	P	E	Q	Q	L	P	R	A	T	F	D	S	L	Y	R	Q	R	R	I	I	F	K	-	P	E	D	L	S	L	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	S	G	P	R	A	L	S	R	N	Q	P	Q	Y	P	A	R	A	Q	A	-	-	-	-	-	-	L	R	I	E	G	Q	V	K	V	K	F	D	V	T	P	D	G	R	V	D	N	V	Q	I	L	S	A	K	P	A	N	M	F	E	R	E	V	K	N	A	M	R	R	W	-	R	Y	E	P	-	-	-	-	-	-	-	-	G	K	P	G	S	G	I	V	V	N	I	L	F	K	I	N	G	T	T	E	I	Q
-	-	-	-	-	-	-	-	-	-	-	-	G	A	D	I	N	N	Y	A	G	Q	I	-	-	-	S	A	I	E	S	F	-	Y	D	A	S	S	Y	A	G	-	-	-	-	-	-	-	K	T	C	T	L	R	I	K	L	A	P	D	G	M	L	L	D	I	K	P	E	G	G	-	-	D	P	A	L	C	Q	A	A	L	A	A	A	K	L	A	-	K	I	P	K	P	P	S	-	-	Q	A	V	Y	E	V	F	-	N	A	P	L	D	F	K	-	P	-	-	-	-	-	-	-	-