PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1iv3a-  (   2 )         rigygedshrLee---grpLyLCgllIpSpVGAlahsdGDAAMHA
d3f0da-  (   1 )      mdfrigqGydvhqLvp---grpLiIGGvtIpyerGLlghSdADVLLhA
d4c82a-  (  60 )    syngirigqGydihkIkvldeektLtLGgvkIn-nVlVlshsdGDIIyhS
                          bbbbbbbbbbbb      bbb  bbb   bbb       aaaaa

                             60        70        80        90        100 
d1iv3a-  (  44 )    LTdALLsAyglgdigllFpdtdprwrgerSevfLreAmrlVeargAkllq
d3f0da-  (  46 )    ITdALFgAAalgdigrhFsd----fkgadSralLreCasrVaqagFairn
d4c82a-  ( 125 )    IVdSILgALgsldigtlfp--------knsaifLryArlLIykknYdIgn
                    aaaaaaa      aaaa            aaaaaaaaaaaaaa    bbb

                             110       120       130       140       150 
d1iv3a-  (  94 )    AsLvLtLdrpkLgphrkaLvdsLsrLMrLpqdrIgLtfktsegl----ap
d3f0da-  (  96 )    VdStIiAqapkLaphidaMranIAaDLdlpldrVnVkaktneklgyLGrg
d4c82a-  ( 175 )    VdInViAqvpkIsnirknIiknIstvLnidesqIsVkgktheklgviGek
                    bbbbbb         aaaaaaaaaaaa   333bbbbbb           

                             160   
d1iv3a-  ( 140 )    shVqArAvVlLd   
d3f0da-  ( 146 )    egIeAqAaAlVVre 
d4c82a-  ( 225 )    kaIeCfAnIlLipkn
                     bbbbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1iv3a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1iv3a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF	IpsF-like	Thermus thermophilus [TaxId: 274]	view
d3f0da- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3f0da- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Burkholderia pseudomallei [TaxId: 28450]	view
d4c82a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4c82a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Plasmodium falciparum [TaxId: 36329]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1iv3a_	A	Q8RQP5	GO:0008299
d1iv3a_	A	Q8RQP5	GO:0008685
d1iv3a_	A	Q8RQP5	GO:0016114
d1iv3a_	A	Q8RQP5	GO:0016829
d1iv3a_	A	Q8RQP5	GO:0019288
d1iv3a_	A	Q8RQP5	GO:0046872

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