PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1eara2  (  75 )    lekVYVIkPqtmqemgkMafeIgnrhtmciieddeILVrydktLeklIde
d1gmua2  (  71 )    deeVSvVrcddpfmlakAcyaLgnrhvplqimpgeLrYhhdhvlDdmLrq
                     bbbbbbb   aaaaaaaaaaaaa     bbb  bbbbb  aaaaaaaa 

                             60       
d1eara2  ( 125 )    vgVsyeqserrfkepfky
d1gmua2  ( 121 )    fgLtVtfgqlpFepeaga
                        bbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1eara2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1eara2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Urease metallochaperone UreE, C-terminal domain	Urease metallochaperone UreE, C-terminal domain	Bacillus pasteurii [TaxId: 1474]		view
d1gmua2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1gmua2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Urease metallochaperone UreE, C-terminal domain	Urease metallochaperone UreE, C-terminal domain	Klebsiella aerogenes [TaxId: 28451]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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L	E	K	V	Y	V	I	K	P	Q	T	M	Q	E	M	G	K	M	A	F	E	I	G	N	R	H	T	M	C	I	I	E	D	D	E	I	L	V	R	Y	D	K	T	L	E	K	L	I	D	E	V	G	V	S	Y	E	Q	S	E	R	R	F	K	E	P	F	K	Y
D	E	E	V	S	V	V	R	C	D	D	P	F	M	L	A	K	A	C	Y	A	L	G	N	R	H	V	P	L	Q	I	M	P	G	E	L	R	Y	H	H	D	H	V	L	D	D	M	L	R	Q	F	G	L	T	V	T	F	G	Q	L	P	F	E	P	E	A	G	A

Member	Chain	UniProtKB	GO term
d1eara2	A	P50049	GO:0005737
d1eara2	A	P50049	GO:0006457
d1eara2	A	P50049	GO:0016151
d1eara2	A	P50049	GO:0019627
d1eara2	A	P50049	GO:0046872
d1eara2	A	P50049	GO:0051082
d1eara2	A	P50049	GO:0065003
d1eara2	A	P50049	GO:0005737
d1eara2	A	P50049	GO:0006457
d1eara2	A	P50049	GO:0016151
d1eara2	A	P50049	GO:0019627
d1eara2	A	P50049	GO:0046872
d1eara2	A	P50049	GO:0051082
d1eara2	A	P50049	GO:0065003
d1gmua2	A	P18317	GO:0005737
d1gmua2	A	P18317	GO:0006457
d1gmua2	A	P18317	GO:0016151
d1gmua2	A	P18317	GO:0019627
d1gmua2	A	P18317	GO:0046872
d1gmua2	A	P18317	GO:0051082
d1gmua2	A	P18317	GO:0065003
d1gmua2	A	P18317	GO:0005737
d1gmua2	A	P18317	GO:0006457
d1gmua2	A	P18317	GO:0016151
d1gmua2	A	P18317	GO:0019627
d1gmua2	A	P18317	GO:0046872
d1gmua2	A	P18317	GO:0051082
d1gmua2	A	P18317	GO:0065003

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L	E	K	V	Y	V	I	K	P	Q	T	M	Q	E	M	G	K	M	A	F	E	I	G	N	R	H	T	M	C	I	I	E	D	D	E	I	L	V	R	Y	D	K	T	L	E	K	L	I	D	E	V	G	V	S	Y	E	Q	S	E	R	R	F	K	E	P	F	K	Y
D	E	E	V	S	V	V	R	C	D	D	P	F	M	L	A	K	A	C	Y	A	L	G	N	R	H	V	P	L	Q	I	M	P	G	E	L	R	Y	H	H	D	H	V	L	D	D	M	L	R	Q	F	G	L	T	V	T	F	G	Q	L	P	F	E	P	E	A	G	A

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L	E	K	V	Y	V	I	K	P	Q	T	M	Q	E	M	G	K	M	A	F	E	I	G	N	R	H	T	M	C	I	I	E	D	D	E	I	L	V	R	Y	D	K	T	L	E	K	L	I	D	E	V	G	V	S	Y	E	Q	S	E	R	R	F	K	E	P	F	K	Y
D	E	E	V	S	V	V	R	C	D	D	P	F	M	L	A	K	A	C	Y	A	L	G	N	R	H	V	P	L	Q	I	M	P	G	E	L	R	Y	H	H	D	H	V	L	D	D	M	L	R	Q	F	G	L	T	V	T	F	G	Q	L	P	F	E	P	E	A	G	A

									10										20										30										40										50										60
L	E	K	V	Y	V	I	K	P	Q	T	M	Q	E	M	G	K	M	A	F	E	I	G	N	R	H	T	M	C	I	I	E	D	D	E	I	L	V	R	Y	D	K	T	L	E	K	L	I	D	E	V	G	V	S	Y	E	Q	S	E	R	R	F	K	E	P	F	K	Y
D	E	E	V	S	V	V	R	C	D	D	P	F	M	L	A	K	A	C	Y	A	L	G	N	R	H	V	P	L	Q	I	M	P	G	E	L	R	Y	H	H	D	H	V	L	D	D	M	L	R	Q	F	G	L	T	V	T	F	G	Q	L	P	F	E	P	E	A	G	A