PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1jr2a-  (   1 )    mkVLLLKdakeddcgqDpyireLglygleAtLIpVlsfeflslpsFSekL
d1wcwa1  (  10 )     rVAYAGlrr-----keaFkalAeklgftpllfpVQatekvpvpeyrdqV
                      bbb            aaaaaaa     bbb   bbbbb      aaaa

                             60        70        80        90        100 
d1jr2a-  (  51 )    shPed-YgGLIFtsprAVeAAelCLeqnnktevWersLkekWnaksVyVv
d1wcwa1  (  54 )    raLaqgVdLFLATtgvGVrdLleAGkalgld------LegpLakAfrLAr
                            bbbb  aaaaaaaaaaaaa           aaaaaa bbbb 

                             110       120       130       140       150 
d1jr2a-  ( 100 )    gnaTaslVskigLdtegetcgnaekLaeyIcsressalplLFPCgnlkrE
d1wcwa1  (  98 )    gakAarALkeagLpPhavgdgtsksLlplLp---qgrgvAALQlyGkplp
                     aaaaaaaaa            aaaa             bbbb       

                             160       170       180       190       200 
d1jr2a-  ( 150 )    iLPkaLkdkgIaMesitVyqtvahp-gIqgnLnsyYsqqgvPaSITFfs-
d1wcwa1  ( 145 )    lLenALaergYrvlpLmPYrhlpdpeGIlrLEeALlr--geVdALAFVaa
                     aaaaaa     bbbb  bbbbb    aaaaaaaaaa      bbbb   

                             210       220       230       240       250 
d1jr2a-  ( 198 )    --psGLtySlkhIqelSgdnidqIkFAAigptTaraLaaqglpvsctAes
d1wcwa1  ( 193 )    iQVeFLFegAkdpkaLreALntrVkALAVgrvTAdALrewgVkPfyvDet
                      aaaaaaa   aaaaa       bbbb  aaaaaaaaa      bb   

                             260       
d1jr2a-  ( 246 )    ptpqaLAtgIrkalq    
d1wcwa1  ( 243 )    erLgsLLqgFkralqkeva
                      aaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1jr2a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1jr2a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uroporphyrinogen III synthase (U3S, HemD)	HemD-like	Human (Homo sapiens) [TaxId: 9606]		view
d1wcwa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wcwa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	HemD-like	Thermus thermophilus [TaxId: 274]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1jr2a_	A	P10746	GO:0004852
d1jr2a_	A	P10746	GO:0005542
d1jr2a_	A	P10746	GO:0005739
d1jr2a_	A	P10746	GO:0005829
d1jr2a_	A	P10746	GO:0006779
d1jr2a_	A	P10746	GO:0006780
d1jr2a_	A	P10746	GO:0006782
d1jr2a_	A	P10746	GO:0006783
d1jr2a_	A	P10746	GO:0006784
d1jr2a_	A	P10746	GO:0006785
d1jr2a_	A	P10746	GO:0016829
d1jr2a_	A	P10746	GO:0033014
d1jr2a_	A	P10746	GO:0048034
d1jr2a_	A	P10746	GO:0070541
d1jr2a_	A	P10746	GO:0071243
d1jr2a_	A	P10746	GO:0071418

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-	R	V	A	Y	A	G	L	R	R	-	-	-	-	-	K	E	A	F	K	A	L	A	E	K	L	G	F	T	P	L	L	F	P	V	Q	A	T	E	K	V	P	V	P	E	Y	R	D	Q	V	R	A	L	A	Q	G	V	D	L	F	L	A	T	T	G	V	G	V	R	D	L	L	E	A	G	K	A	L	G	L	D	-	-	-	-	-	-	L	E	G	P	L	A	K	A	F	R	L	A	R	G	A	K	A	A	R	A	L	K	E	A	G	L	P	P	H	A	V	G	D	G	T	S	K	S	L	L	P	L	L	P	-	-	-	Q	G	R	G	V	A	A	L	Q	L	Y	G	K	P	L	P	L	L	E	N	A	L	A	E	R	G	Y	R	V	L	P	L	M	P	Y	R	H	L	P	D	P	E	G	I	L	R	L	E	E	A	L	L	R	-	-	G	E	V	D	A	L	A	F	V	A	A	I	Q	V	E	F	L	F	E	G	A	K	D	P	K	A	L	R	E	A	L	N	T	R	V	K	A	L	A	V	G	R	V	T	A	D	A	L	R	E	W	G	V	K	P	F	Y	V	D	E	T	E	R	L	G	S	L	L	Q	G	F	K	R	A	L	Q	K	E	V	A

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M	K	V	L	L	L	K	D	A	K	E	D	D	C	G	Q	D	P	Y	I	R	E	L	G	L	Y	G	L	E	A	T	L	I	P	V	L	S	F	E	F	L	S	L	P	S	F	S	E	K	L	S	H	P	E	D	-	Y	G	G	L	I	F	T	S	P	R	A	V	E	A	A	E	L	C	L	E	Q	N	N	K	T	E	V	W	E	R	S	L	K	E	K	W	N	A	K	S	V	Y	V	V	G	N	A	T	A	S	L	V	S	K	I	G	L	D	T	E	G	E	T	C	G	N	A	E	K	L	A	E	Y	I	C	S	R	E	S	S	A	L	P	L	L	F	P	C	G	N	L	K	R	E	I	L	P	K	A	L	K	D	K	G	I	A	M	E	S	I	T	V	Y	Q	T	V	A	H	P	-	G	I	Q	G	N	L	N	S	Y	Y	S	Q	Q	G	V	P	A	S	I	T	F	F	S	-	-	-	P	S	G	L	T	Y	S	L	K	H	I	Q	E	L	S	G	D	N	I	D	Q	I	K	F	A	A	I	G	P	T	T	A	R	A	L	A	A	Q	G	L	P	V	S	C	T	A	E	S	P	T	P	Q	A	L	A	T	G	I	R	K	A	L	Q	-	-	-	-
-	R	V	A	Y	A	G	L	R	R	-	-	-	-	-	K	E	A	F	K	A	L	A	E	K	L	G	F	T	P	L	L	F	P	V	Q	A	T	E	K	V	P	V	P	E	Y	R	D	Q	V	R	A	L	A	Q	G	V	D	L	F	L	A	T	T	G	V	G	V	R	D	L	L	E	A	G	K	A	L	G	L	D	-	-	-	-	-	-	L	E	G	P	L	A	K	A	F	R	L	A	R	G	A	K	A	A	R	A	L	K	E	A	G	L	P	P	H	A	V	G	D	G	T	S	K	S	L	L	P	L	L	P	-	-	-	Q	G	R	G	V	A	A	L	Q	L	Y	G	K	P	L	P	L	L	E	N	A	L	A	E	R	G	Y	R	V	L	P	L	M	P	Y	R	H	L	P	D	P	E	G	I	L	R	L	E	E	A	L	L	R	-	-	G	E	V	D	A	L	A	F	V	A	A	I	Q	V	E	F	L	F	E	G	A	K	D	P	K	A	L	R	E	A	L	N	T	R	V	K	A	L	A	V	G	R	V	T	A	D	A	L	R	E	W	G	V	K	P	F	Y	V	D	E	T	E	R	L	G	S	L	L	Q	G	F	K	R	A	L	Q	K	E	V	A

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