PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2biba1  ( 309 )    sfqagwhksaygnwwyqapdstgeyavgwneiegewyYFnq-----tGiL
d2j8ga1  ( 191 )                                             eeddk--pk
                                                                      

                             60        70        80        90        100 
d2biba1  ( 354 )    lqnqwkkwnnhwfyLtdsGaSAk-nwkkIdgiwyyFnkenqmei-gwvqd
d2j8ga1  ( 198 )    tagtwkqdskgwwFrrnngsfPynkwekIggvwyyFdskGyCltsewlkd
                       bbbb    bbbb           bbb  bbb           bbbb 

                             110       120       130       140       150 
d2biba1  ( 402 )    keqwyyLdvdGsmktgwlqymgqwyyFapsGeMkmgwVkdketwyyMds-
d2j8ga1  ( 248 )    nekwyyLkdnGamAtgWvlvgsewYyMddsGAMvtgwVkyknnWYyMtne
                       bbbb        bbbb    bbbb        bbbbb  bbbbb   

                             160       170       180       190       200 
d2biba1  ( 451 )    --tGvmktgeievagqhyyLedsGaMkqgwhkkandwYfYktdGSrAvgw
d2j8ga1  ( 298 )    rgnmvSnefiks---------------------gkGWyfmntngeladnp
                            bbbb                       bbbb           

                             210       220       230       240 
d2biba1  ( 499 )    ikdkdkwyfLkenGqLlvngkTpeGytVdssGAwlvdvsiek
d2j8ga1  ( 327 )    sft-----------------kepdglitva            
                                              bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2biba1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2biba1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Teichoic acid phosphorylcholine esterase Pce (LytD), C-terminal domain	Cell wall binding repeat	Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]		view
d2j8ga1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j8ga1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Cell wall binding repeat	Bacteriophage cp-1 [TaxId: 10747]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2biba1	A	Q8DQ62	GO:0046872
d2j8ga1	A	P15057	GO:0003796
d2j8ga1	A	P15057	GO:0005515
d2j8ga1	A	P15057	GO:0009253
d2j8ga1	A	P15057	GO:0016798
d2j8ga1	A	P15057	GO:0016998
d2j8ga1	A	P15057	GO:0031640
d2j8ga1	A	P15057	GO:0042742
d2j8ga1	A	P15057	GO:0044659

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