PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1txvb5  (  58 )        vSearvledrplsdkgs---------gdssqvtqVspqrIaLrLrp
d4g1ma3  ( 599 )    dnvckPkLeVsVdsdqkkIyigd-------------dnpLtLiVkAqNqg
d4g1ma4  ( 738 )     vlAaVeIrGvSspdhvfLpipnwehkenpeteedVGpvVqHiYeLrNng
d5ffga2  ( 440 )     pvItVnAgLeVypsiLnQdnktçslpgta----lkvsÇFnVrFÇLkAdg
                          bbbbbb                          bbbbbbbbbb  

                             60        70        80        90        100 
d1txvb5  (  95 )    ------ddsknfsIqVrqVeLevrdlpeeLsLsfnAtçlnnevip-----
d4g1ma3  ( 636 )    ----egAyeAeLiVsIpl----------qAdfigvvr-----------nn
d4g1ma4  ( 787 )    p---ssFskAmLhLqWPykyn----nntLLYILhydidgpMnÇtSdmein
d5ffga2  ( 485 )    kgvLprkLnFqVeLlLDklkq--kgairRALFly----------------
                            bbbbbbb              bbbbbb               

                             110       120       130       140       150 
d1txvb5  ( 382 )    --------------------glksÇmglkigdtVsFsIeAkVrgçpq---
d4g1ma3  ( 661 )    ealarlsÇafktenqtrqVvÇdLgn-pMkagtqllAGLrFsVhQqse---
d4g1ma4  ( 830 )    plrIkisihtLgçgvAqçLkIvÇqVgrLdrgksAiLyVkSLLwTetFmnk
d5ffga2  ( 517 )    -------------srspshsknMtIsr--gglmqçeeliAYLrde--seF
                                     bbbbbbb        bbbbbbbbbb        

                             160       170       180       190       200 
d1txvb5  ( 409 )    ---ekeksFtIkPv------------------gfkdsLiVqVtFdçdcac
d4g1ma3  ( 707 )    --mdtSvkFdLqIqSsNl----------fdk--vSpvvshkVdLa     
d4g1ma4  ( 912 )    enqnhsysLkSsAsFnVieFpyknlpiedit--nstlvtTnVtwgi----
d5ffga2  ( 550 )    rdkltpItIfMeYrLdyrtAadttglqPilnqftpanisrqAhIl     
                          bbbbbbbb                       bbbbbbb      

                       
d1txvb5  ( 438 )    qaq
d4g1ma3                
d4g1ma4  ( 956 )    qpa
d5ffga2

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1txvb5 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1txvb5 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hybrid domain of integrin beta	Integrin domains	Human (Homo sapiens) [TaxId: 9606]	view
d4g1ma3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4g1ma3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d4g1ma4 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4g1ma4 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d5ffga2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5ffga2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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D	N	V	C	K	P	K	L	E	V	S	V	D	S	D	Q	K	K	I	Y	I	G	D	-	-	-	-	-	-	-	-	-	-	-	-	-	D	N	P	L	T	L	I	V	K	A	Q	N	Q	G	-	-	-	-	E	G	A	Y	E	A	E	L	I	V	S	I	P	L	-	-	-	-	-	-	-	-	-	-	Q	A	D	F	I	G	V	V	R	-	-	-	-	-	-	-	-	-	-	-	N	N	E	A	L	A	R	L	S	C	A	F	K	T	E	N	Q	T	R	Q	V	V	C	D	L	G	N	-	P	M	K	A	G	T	Q	L	L	A	G	L	R	F	S	V	H	Q	Q	S	E	-	-	-	-	-	M	D	T	S	V	K	F	D	L	Q	I	Q	S	S	N	L	-	-	-	-	-	-	-	-	-	-	F	D	K	-	-	V	S	P	V	V	S	H	K	V	D	L	A	-	-	-	-	-	-	-	-
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-	P	V	I	T	V	N	A	G	L	E	V	Y	P	S	I	L	N	Q	D	N	K	T	C	S	L	P	G	T	A	-	-	-	-	L	K	V	S	C	F	N	V	R	F	C	L	K	A	D	G	K	G	V	L	P	R	K	L	N	F	Q	V	E	L	L	L	D	K	L	K	Q	-	-	K	G	A	I	R	R	A	L	F	L	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	R	S	P	S	H	S	K	N	M	T	I	S	R	-	-	G	G	L	M	Q	C	E	E	L	I	A	Y	L	R	D	E	-	-	S	E	F	R	D	K	L	T	P	I	T	I	F	M	E	Y	R	L	D	Y	R	T	A	A	D	T	T	G	L	Q	P	I	L	N	Q	F	T	P	A	N	I	S	R	Q	A	H	I	L	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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D	N	V	C	K	P	K	L	E	V	S	V	D	S	D	Q	K	K	I	Y	I	G	D	-	-	-	-	-	-	-	-	-	-	-	-	-	D	N	P	L	T	L	I	V	K	A	Q	N	Q	G	-	-	-	-	E	G	A	Y	E	A	E	L	I	V	S	I	P	L	-	-	-	-	-	-	-	-	-	-	Q	A	D	F	I	G	V	V	R	-	-	-	-	-	-	-	-	-	-	-	N	N	E	A	L	A	R	L	S	C	A	F	K	T	E	N	Q	T	R	Q	V	V	C	D	L	G	N	-	P	M	K	A	G	T	Q	L	L	A	G	L	R	F	S	V	H	Q	Q	S	E	-	-	-	-	-	M	D	T	S	V	K	F	D	L	Q	I	Q	S	S	N	L	-	-	-	-	-	-	-	-	-	-	F	D	K	-	-	V	S	P	V	V	S	H	K	V	D	L	A	-	-	-	-	-	-	-	-
-	V	L	A	A	V	E	I	R	G	V	S	S	P	D	H	V	F	L	P	I	P	N	W	E	H	K	E	N	P	E	T	E	E	D	V	G	P	V	V	Q	H	I	Y	E	L	R	N	N	G	P	-	-	-	S	S	F	S	K	A	M	L	H	L	Q	W	P	Y	K	Y	N	-	-	-	-	N	N	T	L	L	Y	I	L	H	Y	D	I	D	G	P	M	N	C	T	S	D	M	E	I	N	P	L	R	I	K	I	S	I	H	T	L	G	C	G	V	A	Q	C	L	K	I	V	C	Q	V	G	R	L	D	R	G	K	S	A	I	L	Y	V	K	S	L	L	W	T	E	T	F	M	N	K	E	N	Q	N	H	S	Y	S	L	K	S	S	A	S	F	N	V	I	E	F	P	Y	K	N	L	P	I	E	D	I	T	-	-	N	S	T	L	V	T	T	N	V	T	W	G	I	-	-	-	-	Q	P	A
-	P	V	I	T	V	N	A	G	L	E	V	Y	P	S	I	L	N	Q	D	N	K	T	C	S	L	P	G	T	A	-	-	-	-	L	K	V	S	C	F	N	V	R	F	C	L	K	A	D	G	K	G	V	L	P	R	K	L	N	F	Q	V	E	L	L	L	D	K	L	K	Q	-	-	K	G	A	I	R	R	A	L	F	L	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	R	S	P	S	H	S	K	N	M	T	I	S	R	-	-	G	G	L	M	Q	C	E	E	L	I	A	Y	L	R	D	E	-	-	S	E	F	R	D	K	L	T	P	I	T	I	F	M	E	Y	R	L	D	Y	R	T	A	A	D	T	T	G	L	Q	P	I	L	N	Q	F	T	P	A	N	I	S	R	Q	A	H	I	L	-	-	-	-	-	-	-	-

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D	N	V	C	K	P	K	L	E	V	S	V	D	S	D	Q	K	K	I	Y	I	G	D	-	-	-	-	-	-	-	-	-	-	-	-	-	D	N	P	L	T	L	I	V	K	A	Q	N	Q	G	-	-	-	-	E	G	A	Y	E	A	E	L	I	V	S	I	P	L	-	-	-	-	-	-	-	-	-	-	Q	A	D	F	I	G	V	V	R	-	-	-	-	-	-	-	-	-	-	-	N	N	E	A	L	A	R	L	S	C	A	F	K	T	E	N	Q	T	R	Q	V	V	C	D	L	G	N	-	P	M	K	A	G	T	Q	L	L	A	G	L	R	F	S	V	H	Q	Q	S	E	-	-	-	-	-	M	D	T	S	V	K	F	D	L	Q	I	Q	S	S	N	L	-	-	-	-	-	-	-	-	-	-	F	D	K	-	-	V	S	P	V	V	S	H	K	V	D	L	A	-	-	-	-	-	-	-	-
-	V	L	A	A	V	E	I	R	G	V	S	S	P	D	H	V	F	L	P	I	P	N	W	E	H	K	E	N	P	E	T	E	E	D	V	G	P	V	V	Q	H	I	Y	E	L	R	N	N	G	P	-	-	-	S	S	F	S	K	A	M	L	H	L	Q	W	P	Y	K	Y	N	-	-	-	-	N	N	T	L	L	Y	I	L	H	Y	D	I	D	G	P	M	N	C	T	S	D	M	E	I	N	P	L	R	I	K	I	S	I	H	T	L	G	C	G	V	A	Q	C	L	K	I	V	C	Q	V	G	R	L	D	R	G	K	S	A	I	L	Y	V	K	S	L	L	W	T	E	T	F	M	N	K	E	N	Q	N	H	S	Y	S	L	K	S	S	A	S	F	N	V	I	E	F	P	Y	K	N	L	P	I	E	D	I	T	-	-	N	S	T	L	V	T	T	N	V	T	W	G	I	-	-	-	-	Q	P	A
-	P	V	I	T	V	N	A	G	L	E	V	Y	P	S	I	L	N	Q	D	N	K	T	C	S	L	P	G	T	A	-	-	-	-	L	K	V	S	C	F	N	V	R	F	C	L	K	A	D	G	K	G	V	L	P	R	K	L	N	F	Q	V	E	L	L	L	D	K	L	K	Q	-	-	K	G	A	I	R	R	A	L	F	L	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	R	S	P	S	H	S	K	N	M	T	I	S	R	-	-	G	G	L	M	Q	C	E	E	L	I	A	Y	L	R	D	E	-	-	S	E	F	R	D	K	L	T	P	I	T	I	F	M	E	Y	R	L	D	Y	R	T	A	A	D	T	T	G	L	Q	P	I	L	N	Q	F	T	P	A	N	I	S	R	Q	A	H	I	L	-	-	-	-	-	-	-	-

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-	-	-	-	V	S	E	A	R	V	L	E	D	R	P	L	S	D	K	G	S	-	-	-	-	-	-	-	-	-	G	D	S	S	Q	V	T	Q	V	S	P	Q	R	I	A	L	R	L	R	P	-	-	-	-	-	-	D	D	S	K	N	F	S	I	Q	V	R	Q	V	E	L	E	V	R	D	L	P	E	E	L	S	L	S	F	N	A	T	C	L	N	N	E	V	I	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	L	K	S	C	M	G	L	K	I	G	D	T	V	S	F	S	I	E	A	K	V	R	G	C	P	Q	-	-	-	-	-	-	E	K	E	K	S	F	T	I	K	P	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	F	K	D	S	L	I	V	Q	V	T	F	D	C	D	C	A	C	Q	A	Q
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