PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d1kbha-  (   1 )         egqsderalldqlhtllsntdatgleeidralgipelvnqgqale
d7jflc-  (2069 )    dllrtlkspsspqqqqqvlnilks-npqlmaafikqr             
                               aaaaaaaaaa        aaaaaa               

                      
d1kbha-  (  46 )    pk
d7jflc-

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1kbha- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1kbha- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Nuclear receptor coactivator ACTR	Nuclear receptor coactivator interlocking domain	Human (Homo sapiens) [TaxId: 9606]		view
d7jflc- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d7jflc- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Nuclear receptor coactivator interlocking domain	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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D	L	L	R	T	L	K	S	P	S	S	P	Q	Q	Q	Q	Q	V	L	N	I	L	K	S	-	N	P	Q	L	M	A	A	F	I	K	Q	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1kbha_	A	Q9Y6Q9	GO:0003713
d1kbha_	A	Q9Y6Q9	GO:0005634
d1kbha_	A	Q9Y6Q9	GO:0006355
d1kbha_	A	Q9Y6Q9	GO:0016922
d1kbha_	A	Q9Y6Q9	GO:0030374
d1kbha_	A	P45481	GO:0003713
d1kbha_	A	P45481	GO:0005634
d1kbha_	A	P45481	GO:0006355
d1kbha_	A	P45481	GO:0016922
d1kbha_	A	P45481	GO:0030374

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D	L	L	R	T	L	K	S	P	S	S	P	Q	Q	Q	Q	Q	V	L	N	I	L	K	S	-	N	P	Q	L	M	A	A	F	I	K	Q	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-