PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2jqta-  (   1 )    mtvqdyllkFrkisslesleklydhlnytltddqelinMyraadhrrael
d4icgc-  (   6 )       lktdyLlrrcq----lrveny---elsdlavfy-AadHRlAEltnly
                                                          aaaaaaaa    

                             
d2jqta-  (  51 )    vsggr--lf
d4icgc-  (  61 )    dIpssvwfi

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2jqta- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2jqta- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Escherichia coli [TaxId: 562]		view
d4icgc- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4icgc- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Hemolysin expression modulating protein HHA	Salmonella enterica [TaxId: 990282]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50
M	T	V	Q	D	Y	L	L	K	F	R	K	I	S	S	L	E	S	L	E	K	L	Y	D	H	L	N	Y	T	L	T	D	D	Q	E	L	I	N	M	Y	R	A	A	D	H	R	R	A	E	L	V	S	G	G	R	-	-	L	F
-	-	-	L	K	T	D	Y	L	L	R	R	C	Q	-	-	-	-	L	R	V	E	N	Y	-	-	-	E	L	S	D	L	A	V	F	Y	-	A	A	D	H	R	L	A	E	L	T	N	L	Y	D	I	P	S	S	V	W	F	I

									10										20										30										40										50
M	T	V	Q	D	Y	L	L	K	F	R	K	I	S	S	L	E	S	L	E	K	L	Y	D	H	L	N	Y	T	L	T	D	D	Q	E	L	I	N	M	Y	R	A	A	D	H	R	R	A	E	L	V	S	G	G	R	-	-	L	F
-	-	-	L	K	T	D	Y	L	L	R	R	C	Q	-	-	-	-	L	R	V	E	N	Y	-	-	-	E	L	S	D	L	A	V	F	Y	-	A	A	D	H	R	L	A	E	L	T	N	L	Y	D	I	P	S	S	V	W	F	I

									10										20										30										40										50
M	T	V	Q	D	Y	L	L	K	F	R	K	I	S	S	L	E	S	L	E	K	L	Y	D	H	L	N	Y	T	L	T	D	D	Q	E	L	I	N	M	Y	R	A	A	D	H	R	R	A	E	L	V	S	G	G	R	-	-	L	F
-	-	-	L	K	T	D	Y	L	L	R	R	C	Q	-	-	-	-	L	R	V	E	N	Y	-	-	-	E	L	S	D	L	A	V	F	Y	-	A	A	D	H	R	L	A	E	L	T	N	L	Y	D	I	P	S	S	V	W	F	I

									10										20										30										40										50
M	T	V	Q	D	Y	L	L	K	F	R	K	I	S	S	L	E	S	L	E	K	L	Y	D	H	L	N	Y	T	L	T	D	D	Q	E	L	I	N	M	Y	R	A	A	D	H	R	R	A	E	L	V	S	G	G	R	-	-	L	F
-	-	-	L	K	T	D	Y	L	L	R	R	C	Q	-	-	-	-	L	R	V	E	N	Y	-	-	-	E	L	S	D	L	A	V	F	Y	-	A	A	D	H	R	L	A	E	L	T	N	L	Y	D	I	P	S	S	V	W	F	I