PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ii2a2  (   2 )                                          pPtihrnllspe
d1j3ba2  (   2 )                          q----rLealg--Ihpkkrvfwntvspv
d2olra2  (   6 )                          gLtpqeLeayg--IsdVhdivynPsydl
d4gmua1  (   3 )    pqlhngldfsakViqgsLdsLpqeVrkfVegnAqlCqPeyIhICdGseee
                                                             bbb   aaa

                             60        70        80        90        100 
d1ii2a2  (  14 )    LvqwAlk-----iedS-ltar--gaLavmsya-ktgrspldkRIVdTddV
d1j3ba2  (  24 )    LvehTll-----rgegllahh--gpLvvdttp-ytgrspkDkfVVrepeV
d2olra2  (  32 )    LyqeEldpsltgyerGvltnl--gaVavdtGi-ftgrspkDkYIVrddtT
d4gmua1  (  53 )    ygrlLahMqe--egvIrklkkydncwlaltDprdvariesktViI-tqeq
                    aaaaaaa         bb       bb           333bbbb     

                             110       120       130       140       150 
d1ii2a2  (  57 )    r-nvdwg------vnmkLseeSFarVrkiAkefLdtrehLFVvDCFAghd
d1j3ba2  (  66 )    egeiwwg-----evnqpfapeaFeaLYqrVVqyLser-dLYVQdLyagad
d2olra2  (  79 )    rdtfwwad-ggkndnkpLspetWqhLkglVtrqLsgk-rLFVVDAFcgan
d4gmua1  ( 100 )    rdtVpipksgqsqlgrwmseedFekafnarFpgCMkgrtMyVIPFSmgpl
                                    bb aaaaaaaaaaaaaaa     bbbbbbbb   

                             160       170       180       190       200 
d1ii2a2  ( 102 )    e-ryrlkVrVfTTRPyHAlfMrdmlivPt-pelatFgepdYvIyNAGeck
d1j3ba2  ( 110 )    r-ryrlaVrVVTESPwHAlfArnmfilpr-rf-gaf-vpgFtVVHAPyfq
d2olra2  ( 129 )    p-dtrLsVRFITeVaWQAhfVknmFirPsdeelagF--pdFiVMNGAkct
d4gmua1  ( 150 )    gsplAkiGIELTDspyVVasMrimTrMGtsVleaLgdgeFIkCLHSVGcp
                         bbbbbbb  aaaaaaaaaa                bbbbbb    

                             210       220       230       240       250 
d1ii2a2  ( 151 )    Ad-p-----sipgLtstTCVALNFktreQVILgTeyagEMkkgiltVmfe
d1j3ba2  ( 162 )    Av-p-----erDgTrseVFVGISFqrrLVLIVGTkyagEIkkSIftVmny
d2olra2  ( 177 )    Npqw-----keqgLnsenFVAFNLterMQLIGGTwyGgEMkkGMfsMmny
d4gmua1  ( 200 )    lplkkplvnnWaCnpelTlIAHLPdrreIiSFGSGygGNSlLGkkCFalr
                                      bbbbb    bbbbb     aaaaaaaaaaaaa

                             260 
d1ii2a2  ( 195 )    lmpqmn    
d1j3ba2  ( 206 )    lmpkrg    
d2olra2  ( 222 )    llplkg    
d4gmua1  ( 250 )    Iasrlakeeg
                    a

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1ii2a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ii2a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)	PEP carboxykinase N-terminal domain	Trypanosoma cruzi [TaxId: 5693]	view
d1j3ba2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1j3ba2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)	PEP carboxykinase N-terminal domain	Thermus thermophilus [TaxId: 274]	view
d2olra2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2olra2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)	PEP carboxykinase N-terminal domain	Escherichia coli [TaxId: 562]	view
d4gmua1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4gmua1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)	PEP carboxykinase N-terminal domain	Norway rat (Rattus norvegicus) [TaxId: 10116]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	Q	L	H	N	G	L	D	F	S	A	K	V	I	Q	G	S	L	D	S	L	P	Q	E	V	R	K	F	V	E	G	N	A	Q	L	C	Q	P	E	Y	I	H	I	C	D	G	S	E	E	E	Y	G	R	L	L	A	H	M	Q	E	-	-	E	G	V	I	R	K	L	K	K	Y	D	N	C	W	L	A	L	T	D	P	R	D	V	A	R	I	E	S	K	T	V	I	I	-	T	Q	E	Q	R	D	T	V	P	I	P	K	S	G	Q	S	Q	L	G	R	W	M	S	E	E	D	F	E	K	A	F	N	A	R	F	P	G	C	M	K	G	R	T	M	Y	V	I	P	F	S	M	G	P	L	G	S	P	L	A	K	I	G	I	E	L	T	D	S	P	Y	V	V	A	S	M	R	I	M	T	R	M	G	T	S	V	L	E	A	L	G	D	G	E	F	I	K	C	L	H	S	V	G	C	P	L	P	L	K	K	P	L	V	N	N	W	A	C	N	P	E	L	T	L	I	A	H	L	P	D	R	R	E	I	I	S	F	G	S	G	Y	G	G	N	S	L	L	G	K	K	C	F	A	L	R	I	A	S	R	L	A	K	E	E	G

Member	Chain	UniProtKB	GO term
d1ii2a2	A	P51058	GO:0004611
d1ii2a2	A	P51058	GO:0004612
d1ii2a2	A	P51058	GO:0005524
d1ii2a2	A	P51058	GO:0005829
d1ii2a2	A	P51058	GO:0006094
d1ii2a2	A	P51058	GO:0016831
d1ii2a2	A	P51058	GO:0017076
d1ii2a2	A	P51058	GO:0020015
d1j3ba2	A	Q5SLL5	GO:0004611
d1j3ba2	A	Q5SLL5	GO:0004612
d1j3ba2	A	Q5SLL5	GO:0005524
d1j3ba2	A	Q5SLL5	GO:0005737
d1j3ba2	A	Q5SLL5	GO:0005829
d1j3ba2	A	Q5SLL5	GO:0006094
d1j3ba2	A	Q5SLL5	GO:0016831
d1j3ba2	A	Q5SLL5	GO:0017076
d1j3ba2	A	Q5SLL5	GO:0046872
d2olra2	A	P22259	GO:0000287
d2olra2	A	P22259	GO:0004611
d2olra2	A	P22259	GO:0004612
d2olra2	A	P22259	GO:0005509
d2olra2	A	P22259	GO:0005524
d2olra2	A	P22259	GO:0005737
d2olra2	A	P22259	GO:0005829
d2olra2	A	P22259	GO:0006094
d2olra2	A	P22259	GO:0016831
d2olra2	A	P22259	GO:0017076
d2olra2	A	P22259	GO:0046872
d2olra2	A	P22259	GO:0000287
d2olra2	A	P22259	GO:0004611
d2olra2	A	P22259	GO:0004612
d2olra2	A	P22259	GO:0005509
d2olra2	A	P22259	GO:0005524
d2olra2	A	P22259	GO:0005737
d2olra2	A	P22259	GO:0005829
d2olra2	A	P22259	GO:0006094
d2olra2	A	P22259	GO:0016831
d2olra2	A	P22259	GO:0017076
d2olra2	A	P22259	GO:0046872

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P	Q	L	H	N	G	L	D	F	S	A	K	V	I	Q	G	S	L	D	S	L	P	Q	E	V	R	K	F	V	E	G	N	A	Q	L	C	Q	P	E	Y	I	H	I	C	D	G	S	E	E	E	Y	G	R	L	L	A	H	M	Q	E	-	-	E	G	V	I	R	K	L	K	K	Y	D	N	C	W	L	A	L	T	D	P	R	D	V	A	R	I	E	S	K	T	V	I	I	-	T	Q	E	Q	R	D	T	V	P	I	P	K	S	G	Q	S	Q	L	G	R	W	M	S	E	E	D	F	E	K	A	F	N	A	R	F	P	G	C	M	K	G	R	T	M	Y	V	I	P	F	S	M	G	P	L	G	S	P	L	A	K	I	G	I	E	L	T	D	S	P	Y	V	V	A	S	M	R	I	M	T	R	M	G	T	S	V	L	E	A	L	G	D	G	E	F	I	K	C	L	H	S	V	G	C	P	L	P	L	K	K	P	L	V	N	N	W	A	C	N	P	E	L	T	L	I	A	H	L	P	D	R	R	E	I	I	S	F	G	S	G	Y	G	G	N	S	L	L	G	K	K	C	F	A	L	R	I	A	S	R	L	A	K	E	E	G

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P	Q	L	H	N	G	L	D	F	S	A	K	V	I	Q	G	S	L	D	S	L	P	Q	E	V	R	K	F	V	E	G	N	A	Q	L	C	Q	P	E	Y	I	H	I	C	D	G	S	E	E	E	Y	G	R	L	L	A	H	M	Q	E	-	-	E	G	V	I	R	K	L	K	K	Y	D	N	C	W	L	A	L	T	D	P	R	D	V	A	R	I	E	S	K	T	V	I	I	-	T	Q	E	Q	R	D	T	V	P	I	P	K	S	G	Q	S	Q	L	G	R	W	M	S	E	E	D	F	E	K	A	F	N	A	R	F	P	G	C	M	K	G	R	T	M	Y	V	I	P	F	S	M	G	P	L	G	S	P	L	A	K	I	G	I	E	L	T	D	S	P	Y	V	V	A	S	M	R	I	M	T	R	M	G	T	S	V	L	E	A	L	G	D	G	E	F	I	K	C	L	H	S	V	G	C	P	L	P	L	K	K	P	L	V	N	N	W	A	C	N	P	E	L	T	L	I	A	H	L	P	D	R	R	E	I	I	S	F	G	S	G	Y	G	G	N	S	L	L	G	K	K	C	F	A	L	R	I	A	S	R	L	A	K	E	E	G

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260
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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	-	-	-	-	R	L	E	A	L	G	-	-	I	H	P	K	K	R	V	F	W	N	T	V	S	P	V	L	V	E	H	T	L	L	-	-	-	-	-	R	G	E	G	L	L	A	H	H	-	-	G	P	L	V	V	D	T	T	P	-	Y	T	G	R	S	P	K	D	K	F	V	V	R	E	P	E	V	E	G	E	I	W	W	G	-	-	-	-	-	E	V	N	Q	P	F	A	P	E	A	F	E	A	L	Y	Q	R	V	V	Q	Y	L	S	E	R	-	D	L	Y	V	Q	D	L	Y	A	G	A	D	R	-	R	Y	R	L	A	V	R	V	V	T	E	S	P	W	H	A	L	F	A	R	N	M	F	I	L	P	R	-	R	F	-	G	A	F	-	V	P	G	F	T	V	V	H	A	P	Y	F	Q	A	V	-	P	-	-	-	-	-	E	R	D	G	T	R	S	E	V	F	V	G	I	S	F	Q	R	R	L	V	L	I	V	G	T	K	Y	A	G	E	I	K	K	S	I	F	T	V	M	N	Y	L	M	P	K	R	G	-	-	-	-
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P	Q	L	H	N	G	L	D	F	S	A	K	V	I	Q	G	S	L	D	S	L	P	Q	E	V	R	K	F	V	E	G	N	A	Q	L	C	Q	P	E	Y	I	H	I	C	D	G	S	E	E	E	Y	G	R	L	L	A	H	M	Q	E	-	-	E	G	V	I	R	K	L	K	K	Y	D	N	C	W	L	A	L	T	D	P	R	D	V	A	R	I	E	S	K	T	V	I	I	-	T	Q	E	Q	R	D	T	V	P	I	P	K	S	G	Q	S	Q	L	G	R	W	M	S	E	E	D	F	E	K	A	F	N	A	R	F	P	G	C	M	K	G	R	T	M	Y	V	I	P	F	S	M	G	P	L	G	S	P	L	A	K	I	G	I	E	L	T	D	S	P	Y	V	V	A	S	M	R	I	M	T	R	M	G	T	S	V	L	E	A	L	G	D	G	E	F	I	K	C	L	H	S	V	G	C	P	L	P	L	K	K	P	L	V	N	N	W	A	C	N	P	E	L	T	L	I	A	H	L	P	D	R	R	E	I	I	S	F	G	S	G	Y	G	G	N	S	L	L	G	K	K	C	F	A	L	R	I	A	S	R	L	A	K	E	E	G