PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1a62a1  (   2 )            nltelkntpvseLitlGenglenlar--rkqdIIfailkqha
d2hjqa1  (  50 )    qkddpinyteselkgmnkaeHesiisnlgrnPsdfknaderiayilkqid
d2outa1  (  94 )                     veqlkaqltergitfkqsAtkaelialfa---p
                                      aaaaaaaa            aaaaaaa     

                            
d1a62a1  (  44 )    ksge    
d2hjqa1  ( 100 )    nkge    
d2outa1  ( 124 )    adgeksea

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1a62a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1a62a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Rho termination factor, N-terminal domain	Rho termination factor, N-terminal domain	Escherichia coli [TaxId: 562]	view
d2hjqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hjqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein YqbF	YqbF C-terminal domain-like	Bacillus subtilis [TaxId: 1423]	view
d2outa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2outa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein HI1507 in Mu-like prophage FluMu region	YqbF C-terminal domain-like	Haemophilus influenzae [TaxId: 727]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	N	L	T	E	L	K	N	T	P	V	S	E	L	I	T	L	G	E	N	G	L	E	N	L	A	R	-	-	R	K	Q	D	I	I	F	A	I	L	K	Q	H	A	K	S	G	E	-	-	-	-
Q	K	D	D	P	I	N	Y	T	E	S	E	L	K	G	M	N	K	A	E	H	E	S	I	I	S	N	L	G	R	N	P	S	D	F	K	N	A	D	E	R	I	A	Y	I	L	K	Q	I	D	N	K	G	E	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	E	Q	L	K	A	Q	L	T	E	R	G	I	T	F	K	Q	S	A	T	K	A	E	L	I	A	L	F	A	-	-	-	P	A	D	G	E	K	S	E	A

Member	Chain	UniProtKB	GO term
d1a62a1	A	P0AG30	GO:0003676
d1a62a1	A	P0AG30	GO:0003723
d1a62a1	A	P0AG30	GO:0005524
d1a62a1	A	P0AG30	GO:0006353
d1a62a1	A	P0AG30	GO:0008186
d2outa1	A	P44228	GO:0003677
d2outa1	A	P44228	GO:0003677

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-	-	-	-	-	-	-	-	N	L	T	E	L	K	N	T	P	V	S	E	L	I	T	L	G	E	N	G	L	E	N	L	A	R	-	-	R	K	Q	D	I	I	F	A	I	L	K	Q	H	A	K	S	G	E	-	-	-	-
Q	K	D	D	P	I	N	Y	T	E	S	E	L	K	G	M	N	K	A	E	H	E	S	I	I	S	N	L	G	R	N	P	S	D	F	K	N	A	D	E	R	I	A	Y	I	L	K	Q	I	D	N	K	G	E	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	E	Q	L	K	A	Q	L	T	E	R	G	I	T	F	K	Q	S	A	T	K	A	E	L	I	A	L	F	A	-	-	-	P	A	D	G	E	K	S	E	A

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-	-	-	-	-	-	-	-	N	L	T	E	L	K	N	T	P	V	S	E	L	I	T	L	G	E	N	G	L	E	N	L	A	R	-	-	R	K	Q	D	I	I	F	A	I	L	K	Q	H	A	K	S	G	E	-	-	-	-
Q	K	D	D	P	I	N	Y	T	E	S	E	L	K	G	M	N	K	A	E	H	E	S	I	I	S	N	L	G	R	N	P	S	D	F	K	N	A	D	E	R	I	A	Y	I	L	K	Q	I	D	N	K	G	E	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	E	Q	L	K	A	Q	L	T	E	R	G	I	T	F	K	Q	S	A	T	K	A	E	L	I	A	L	F	A	-	-	-	P	A	D	G	E	K	S	E	A

									10										20										30										40										50
-	-	-	-	-	-	-	-	N	L	T	E	L	K	N	T	P	V	S	E	L	I	T	L	G	E	N	G	L	E	N	L	A	R	-	-	R	K	Q	D	I	I	F	A	I	L	K	Q	H	A	K	S	G	E	-	-	-	-
Q	K	D	D	P	I	N	Y	T	E	S	E	L	K	G	M	N	K	A	E	H	E	S	I	I	S	N	L	G	R	N	P	S	D	F	K	N	A	D	E	R	I	A	Y	I	L	K	Q	I	D	N	K	G	E	-	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	E	Q	L	K	A	Q	L	T	E	R	G	I	T	F	K	Q	S	A	T	K	A	E	L	I	A	L	F	A	-	-	-	P	A	D	G	E	K	S	E	A