PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1jeqa1  ( 559 )    yseeeLkthiskgtLgkFtvpmLkeACrayglksglkkqeLleaLtkhfq
d1kcfa1  (   3 )                    tvklsfLqhiCkltglsrsg---kdLlrivdspi
d1v66a-  (   1 )        madsaelkqmvmslrvselqvllgyagrnkhgrkhelltkAlhllk
d1zrja1  (   1 )                mdvrrlkvnelreelqrrgldtrglkaelAerlqaal 
d4uzwa1  (   2 )                adyssltvvqlkdlltkrnlsvgglknelvqrlikdde
                                       aaaaaaaaaa        aaaaaaaaaaa  

                             60        70  
d1jeqa1  ( 609 )    d                      
d1kcfa1  (  37 )    yp                     
d1v66a-  (  47 )    agCspavqmkikelyrrrf    
d1zrja1                                    
d4uzwa1  (  40 )    es------------kgesevspq

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1jeqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1jeqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA binding C-terminal domain of ku70	SAP domain	Human (Homo sapiens) [TaxId: 9606]	view
d1kcfa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1kcfa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Mitochondrial resolvase ydc2 N-terminal domain	SAP domain	Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]	view
d1v66a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1v66a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1	SAP domain	Human (Homo sapiens) [TaxId: 9606]	view
d1zrja1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zrja1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Heterogeneous nuclear ribonucleoprotein U-like protein 1	SAP domain	Human (Homo sapiens) [TaxId: 9606]	view
d4uzwa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4uzwa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	SAP domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view

Domain ID	Name
d1y02a1	1y02 A:71-114

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1jeqa1	A	P12956	GO:0000723
d1jeqa1	A	P12956	GO:0000725
d1jeqa1	A	P12956	GO:0000781
d1jeqa1	A	P12956	GO:0000783
d1jeqa1	A	P12956	GO:0000976
d1jeqa1	A	P12956	GO:0002218
d1jeqa1	A	P12956	GO:0003677
d1jeqa1	A	P12956	GO:0003678
d1jeqa1	A	P12956	GO:0003684
d1jeqa1	A	P12956	GO:0003690
d1jeqa1	A	P12956	GO:0003691
d1jeqa1	A	P12956	GO:0003723
d1jeqa1	A	P12956	GO:0004386
d1jeqa1	A	P12956	GO:0005515
d1jeqa1	A	P12956	GO:0005524
d1jeqa1	A	P12956	GO:0005576
d1jeqa1	A	P12956	GO:0005634
d1jeqa1	A	P12956	GO:0005654
d1jeqa1	A	P12956	GO:0005667
d1jeqa1	A	P12956	GO:0005694
d1jeqa1	A	P12956	GO:0005730
d1jeqa1	A	P12956	GO:0005829
d1jeqa1	A	P12956	GO:0005958
d1jeqa1	A	P12956	GO:0006266
d1jeqa1	A	P12956	GO:0006281
d1jeqa1	A	P12956	GO:0006303
d1jeqa1	A	P12956	GO:0006310
d1jeqa1	A	P12956	GO:0008094
d1jeqa1	A	P12956	GO:0010558
d1jeqa1	A	P12956	GO:0016020
d1jeqa1	A	P12956	GO:0016787
d1jeqa1	A	P12956	GO:0016829
d1jeqa1	A	P12956	GO:0016887
d1jeqa1	A	P12956	GO:0030332
d1jeqa1	A	P12956	GO:0032508
d1jeqa1	A	P12956	GO:0032991
d1jeqa1	A	P12956	GO:0032993
d1jeqa1	A	P12956	GO:0034774
d1jeqa1	A	P12956	GO:0042162
d1jeqa1	A	P12956	GO:0043564
d1jeqa1	A	P12956	GO:0044877
d1jeqa1	A	P12956	GO:0045027
d1jeqa1	A	P12956	GO:0045087
d1jeqa1	A	P12956	GO:0045621
d1jeqa1	A	P12956	GO:0045860
d1jeqa1	A	P12956	GO:0045892
d1jeqa1	A	P12956	GO:0045893
d1jeqa1	A	P12956	GO:0045944
d1jeqa1	A	P12956	GO:0048660
d1jeqa1	A	P12956	GO:0051575
d1jeqa1	A	P12956	GO:0070418
d1jeqa1	A	P12956	GO:0070419
d1jeqa1	A	P12956	GO:0071475
d1jeqa1	A	P12956	GO:0071480
d1jeqa1	A	P12956	GO:0071481
d1jeqa1	A	P12956	GO:0097110
d1jeqa1	A	P12956	GO:0097680
d1jeqa1	A	P12956	GO:1904813
d1jeqa1	A	P13010	GO:0000723
d1jeqa1	A	P13010	GO:0000725
d1jeqa1	A	P13010	GO:0000781
d1jeqa1	A	P13010	GO:0000783
d1jeqa1	A	P13010	GO:0000976
d1jeqa1	A	P13010	GO:0002218
d1jeqa1	A	P13010	GO:0003677
d1jeqa1	A	P13010	GO:0003678
d1jeqa1	A	P13010	GO:0003684
d1jeqa1	A	P13010	GO:0003690
d1jeqa1	A	P13010	GO:0003691
d1jeqa1	A	P13010	GO:0003723
d1jeqa1	A	P13010	GO:0004386
d1jeqa1	A	P13010	GO:0005515
d1jeqa1	A	P13010	GO:0005524
d1jeqa1	A	P13010	GO:0005576
d1jeqa1	A	P13010	GO:0005634
d1jeqa1	A	P13010	GO:0005654
d1jeqa1	A	P13010	GO:0005667
d1jeqa1	A	P13010	GO:0005694
d1jeqa1	A	P13010	GO:0005730
d1jeqa1	A	P13010	GO:0005829
d1jeqa1	A	P13010	GO:0005958
d1jeqa1	A	P13010	GO:0006266
d1jeqa1	A	P13010	GO:0006281
d1jeqa1	A	P13010	GO:0006303
d1jeqa1	A	P13010	GO:0006310
d1jeqa1	A	P13010	GO:0008094
d1jeqa1	A	P13010	GO:0010558
d1jeqa1	A	P13010	GO:0016020
d1jeqa1	A	P13010	GO:0016787
d1jeqa1	A	P13010	GO:0016829
d1jeqa1	A	P13010	GO:0016887
d1jeqa1	A	P13010	GO:0030332
d1jeqa1	A	P13010	GO:0032508
d1jeqa1	A	P13010	GO:0032991
d1jeqa1	A	P13010	GO:0032993
d1jeqa1	A	P13010	GO:0034774
d1jeqa1	A	P13010	GO:0042162
d1jeqa1	A	P13010	GO:0043564
d1jeqa1	A	P13010	GO:0044877
d1jeqa1	A	P13010	GO:0045027
d1jeqa1	A	P13010	GO:0045087
d1jeqa1	A	P13010	GO:0045621
d1jeqa1	A	P13010	GO:0045860
d1jeqa1	A	P13010	GO:0045892
d1jeqa1	A	P13010	GO:0045893
d1jeqa1	A	P13010	GO:0045944
d1jeqa1	A	P13010	GO:0048660
d1jeqa1	A	P13010	GO:0051575
d1jeqa1	A	P13010	GO:0070418
d1jeqa1	A	P13010	GO:0070419
d1jeqa1	A	P13010	GO:0071475
d1jeqa1	A	P13010	GO:0071480
d1jeqa1	A	P13010	GO:0071481
d1jeqa1	A	P13010	GO:0097110
d1jeqa1	A	P13010	GO:0097680
d1jeqa1	A	P13010	GO:1904813
d1kcfa1	A	Q10423	GO:0000002
d1kcfa1	A	Q10423	GO:0000400
d1kcfa1	A	Q10423	GO:0000402
d1kcfa1	A	Q10423	GO:0000403
d1kcfa1	A	Q10423	GO:0003676
d1kcfa1	A	Q10423	GO:0004519
d1kcfa1	A	Q10423	GO:0004520
d1kcfa1	A	Q10423	GO:0005515
d1kcfa1	A	Q10423	GO:0005737
d1kcfa1	A	Q10423	GO:0005739
d1kcfa1	A	Q10423	GO:0008821
d1kcfa1	A	Q10423	GO:0032042
d1kcfa1	A	Q10423	GO:0046872
d1kcfa1	A	Q10423	GO:0070336

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