PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1hc7a3  ( 404 )    trkVdt--yeaFkeAVqe--gfAlAfHCgdkacerlIqeettAttrcvpf
d1nj1a2  ( 411 )    ireAet--leeAsrIVdekrgiISFmwCGeeecgmdVeekVrVdilgiq-
d1nj8a2  ( 394 )    itiledinpdeIkniLsekrgvILVpfk-eeiyneeLeekVeAtilgete
                     bb     aaaaaaa       bbb         aaaaaaa   bbb   

                             60        70       
d1hc7a3  ( 450 )    eaepeegfCVrcgrpSaygkrVvFakay
d1nj1a2  ( 458 )    --eegsgtCIncgreAp--yrAyLarty
d1nj8a2  ( 443 )    yk---------------gnkyIaIakty
                                         bbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1hc7a3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hc7a3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	C-terminal domain of ProRS	C-terminal domain of ProRS	Thermus thermophilus [TaxId: 274]	view
d1nj1a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nj1a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	C-terminal domain of ProRS	C-terminal domain of ProRS	Methanothermobacter thermautotrophicus [TaxId: 145262]	view
d1nj8a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nj8a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	C-terminal domain of ProRS	C-terminal domain of ProRS	Methanocaldococcus jannaschii [TaxId: 2190]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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I	R	E	A	E	T	-	-	L	E	E	A	S	R	I	V	D	E	K	R	G	I	I	S	F	M	W	C	G	E	E	E	C	G	M	D	V	E	E	K	V	R	V	D	I	L	G	I	Q	-	-	-	E	E	G	S	G	T	C	I	N	C	G	R	E	A	P	-	-	Y	R	A	Y	L	A	R	T	Y
I	T	I	L	E	D	I	N	P	D	E	I	K	N	I	L	S	E	K	R	G	V	I	L	V	P	F	K	-	E	E	I	Y	N	E	E	L	E	E	K	V	E	A	T	I	L	G	E	T	E	Y	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	N	K	Y	I	A	I	A	K	T	Y

Member	Chain	UniProtKB	GO term
d1hc7a3	A	Q5SM28	GO:0000166
d1hc7a3	A	Q5SM28	GO:0004812
d1hc7a3	A	Q5SM28	GO:0004827
d1hc7a3	A	Q5SM28	GO:0005524
d1hc7a3	A	Q5SM28	GO:0005737
d1hc7a3	A	Q5SM28	GO:0006412
d1hc7a3	A	Q5SM28	GO:0006418
d1hc7a3	A	Q5SM28	GO:0006433
d1hc7a3	A	Q5SM28	GO:0017101
d1hc7a3	A	Q5SM28	GO:0046872
d1hc7a3	A	Q5SM28	GO:0000166
d1hc7a3	A	Q5SM28	GO:0004812
d1hc7a3	A	Q5SM28	GO:0004827
d1hc7a3	A	Q5SM28	GO:0005524
d1hc7a3	A	Q5SM28	GO:0005737
d1hc7a3	A	Q5SM28	GO:0006412
d1hc7a3	A	Q5SM28	GO:0006418
d1hc7a3	A	Q5SM28	GO:0006433
d1hc7a3	A	Q5SM28	GO:0017101
d1hc7a3	A	Q5SM28	GO:0046872
d1hc7a3	A	Q5SM28	GO:0000166
d1hc7a3	A	Q5SM28	GO:0004812
d1hc7a3	A	Q5SM28	GO:0004827
d1hc7a3	A	Q5SM28	GO:0005524
d1hc7a3	A	Q5SM28	GO:0005737
d1hc7a3	A	Q5SM28	GO:0006412
d1hc7a3	A	Q5SM28	GO:0006418
d1hc7a3	A	Q5SM28	GO:0006433
d1hc7a3	A	Q5SM28	GO:0017101
d1hc7a3	A	Q5SM28	GO:0046872
d1hc7a3	A	Q5SM28	GO:0000166
d1hc7a3	A	Q5SM28	GO:0004812
d1hc7a3	A	Q5SM28	GO:0004827
d1hc7a3	A	Q5SM28	GO:0005524
d1hc7a3	A	Q5SM28	GO:0005737
d1hc7a3	A	Q5SM28	GO:0006412
d1hc7a3	A	Q5SM28	GO:0006418
d1hc7a3	A	Q5SM28	GO:0006433
d1hc7a3	A	Q5SM28	GO:0017101
d1hc7a3	A	Q5SM28	GO:0046872
d1nj1a2	A	O26708	GO:0000166
d1nj1a2	A	O26708	GO:0004812
d1nj1a2	A	O26708	GO:0004827
d1nj1a2	A	O26708	GO:0005515
d1nj1a2	A	O26708	GO:0005524
d1nj1a2	A	O26708	GO:0005737
d1nj1a2	A	O26708	GO:0006412
d1nj1a2	A	O26708	GO:0006418
d1nj1a2	A	O26708	GO:0006433
d1nj1a2	A	O26708	GO:0017101
d1nj1a2	A	O26708	GO:0046872
d1nj8a2	A	Q58635	GO:0000166
d1nj8a2	A	Q58635	GO:0004812
d1nj8a2	A	Q58635	GO:0004827
d1nj8a2	A	Q58635	GO:0005524
d1nj8a2	A	Q58635	GO:0005737
d1nj8a2	A	Q58635	GO:0006412
d1nj8a2	A	Q58635	GO:0006418
d1nj8a2	A	Q58635	GO:0006433

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I	R	E	A	E	T	-	-	L	E	E	A	S	R	I	V	D	E	K	R	G	I	I	S	F	M	W	C	G	E	E	E	C	G	M	D	V	E	E	K	V	R	V	D	I	L	G	I	Q	-	-	-	E	E	G	S	G	T	C	I	N	C	G	R	E	A	P	-	-	Y	R	A	Y	L	A	R	T	Y
I	T	I	L	E	D	I	N	P	D	E	I	K	N	I	L	S	E	K	R	G	V	I	L	V	P	F	K	-	E	E	I	Y	N	E	E	L	E	E	K	V	E	A	T	I	L	G	E	T	E	Y	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	N	K	Y	I	A	I	A	K	T	Y

									10										20										30										40										50										60										70
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I	R	E	A	E	T	-	-	L	E	E	A	S	R	I	V	D	E	K	R	G	I	I	S	F	M	W	C	G	E	E	E	C	G	M	D	V	E	E	K	V	R	V	D	I	L	G	I	Q	-	-	-	E	E	G	S	G	T	C	I	N	C	G	R	E	A	P	-	-	Y	R	A	Y	L	A	R	T	Y
I	T	I	L	E	D	I	N	P	D	E	I	K	N	I	L	S	E	K	R	G	V	I	L	V	P	F	K	-	E	E	I	Y	N	E	E	L	E	E	K	V	E	A	T	I	L	G	E	T	E	Y	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	N	K	Y	I	A	I	A	K	T	Y

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I	R	E	A	E	T	-	-	L	E	E	A	S	R	I	V	D	E	K	R	G	I	I	S	F	M	W	C	G	E	E	E	C	G	M	D	V	E	E	K	V	R	V	D	I	L	G	I	Q	-	-	-	E	E	G	S	G	T	C	I	N	C	G	R	E	A	P	-	-	Y	R	A	Y	L	A	R	T	Y
I	T	I	L	E	D	I	N	P	D	E	I	K	N	I	L	S	E	K	R	G	V	I	L	V	P	F	K	-	E	E	I	Y	N	E	E	L	E	E	K	V	E	A	T	I	L	G	E	T	E	Y	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	N	K	Y	I	A	I	A	K	T	Y