PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1i3ja-  ( 149 )    kfCkcgvriqtsaytcskcrnrsgennsffnhkhsditkskisekmkgkk
d1u3em2  ( 106 )                                        lnvskaqqiak---
                                                           aaaaaaa    

                             60        70        80        90        100 
d1i3ja-  ( 199 )    psnikkISCd-----gvifdCaadAarhfkissglVtyrvksd-----kw
d1u3em2  ( 117 )    iknqkpIiVispdgiekeypstkcACeelgLtrgkVtdVLkghrihhkgy
                          bbb       bbb  aaaaaaaa   aaaaaaaa          

                            
d1i3ja-  ( 239 )    nWfyin  
d1u3em2  ( 167 )    tFryklng
                     bbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1i3ja- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1i3ja- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA-binding domain of intron endonuclease I-TevI	DNA-binding domain of intron-encoded endonucleases	Bacteriophage T4 [TaxId: 10665]		view
d1u3em2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1u3em2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Intron-encoded homing endonuclease I-HmuI	DNA-binding domain of intron-encoded endonucleases	Bacteriophage SPO1 [TaxId: 10685]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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K	F	C	K	C	G	V	R	I	Q	T	S	A	Y	T	C	S	K	C	R	N	R	S	G	E	N	N	S	F	F	N	H	K	H	S	D	I	T	K	S	K	I	S	E	K	M	K	G	K	K	P	S	N	I	K	K	I	S	C	D	-	-	-	-	-	G	V	I	F	D	C	A	A	D	A	A	R	H	F	K	I	S	S	G	L	V	T	Y	R	V	K	S	D	-	-	-	-	-	K	W	N	W	F	Y	I	N	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	N	V	S	K	A	Q	Q	I	A	K	-	-	-	I	K	N	Q	K	P	I	I	V	I	S	P	D	G	I	E	K	E	Y	P	S	T	K	C	A	C	E	E	L	G	L	T	R	G	K	V	T	D	V	L	K	G	H	R	I	H	H	K	G	Y	T	F	R	Y	K	L	N	G

Member	Chain	UniProtKB	GO term
d1i3ja_	A	P13299	GO:0003677
d1i3ja_	A	P13299	GO:0004519
d1u3em2	M	P34081	GO:0004519
d1u3em2	M	P34081	GO:0006314
d1u3em2	M	P34081	GO:0016788

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	N	V	S	K	A	Q	Q	I	A	K	-	-	-	I	K	N	Q	K	P	I	I	V	I	S	P	D	G	I	E	K	E	Y	P	S	T	K	C	A	C	E	E	L	G	L	T	R	G	K	V	T	D	V	L	K	G	H	R	I	H	H	K	G	Y	T	F	R	Y	K	L	N	G

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K	F	C	K	C	G	V	R	I	Q	T	S	A	Y	T	C	S	K	C	R	N	R	S	G	E	N	N	S	F	F	N	H	K	H	S	D	I	T	K	S	K	I	S	E	K	M	K	G	K	K	P	S	N	I	K	K	I	S	C	D	-	-	-	-	-	G	V	I	F	D	C	A	A	D	A	A	R	H	F	K	I	S	S	G	L	V	T	Y	R	V	K	S	D	-	-	-	-	-	K	W	N	W	F	Y	I	N	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	N	V	S	K	A	Q	Q	I	A	K	-	-	-	I	K	N	Q	K	P	I	I	V	I	S	P	D	G	I	E	K	E	Y	P	S	T	K	C	A	C	E	E	L	G	L	T	R	G	K	V	T	D	V	L	K	G	H	R	I	H	H	K	G	Y	T	F	R	Y	K	L	N	G

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K	F	C	K	C	G	V	R	I	Q	T	S	A	Y	T	C	S	K	C	R	N	R	S	G	E	N	N	S	F	F	N	H	K	H	S	D	I	T	K	S	K	I	S	E	K	M	K	G	K	K	P	S	N	I	K	K	I	S	C	D	-	-	-	-	-	G	V	I	F	D	C	A	A	D	A	A	R	H	F	K	I	S	S	G	L	V	T	Y	R	V	K	S	D	-	-	-	-	-	K	W	N	W	F	Y	I	N	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	N	V	S	K	A	Q	Q	I	A	K	-	-	-	I	K	N	Q	K	P	I	I	V	I	S	P	D	G	I	E	K	E	Y	P	S	T	K	C	A	C	E	E	L	G	L	T	R	G	K	V	T	D	V	L	K	G	H	R	I	H	H	K	G	Y	T	F	R	Y	K	L	N	G