PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1hw7a-  (   6 )    hdqLhrylfenfavrGElVtVsetLqqiLenhdypqpVknvLAeLLVATS
d1vq0a1  (   1 )      mIyygtmfdhkVrFSIVrMrevVeeArnrhaLsyLATVVLGrALIGAA
d1vzya1  (   1 )    mDyLVkAlAydgkVrAyAArTtdMVneGqrrhgTwpTASAALGrTMTASL
                       bbbbbb    bbbbbbb aaaaaaaa      aaaaaaaaaaaaaaa

                             60        70        80        90        100 
d1hw7a-  (  56 )    LLTAtlkfdgdItVqLqgdgPMnlAvInGnnnqqMrgvAr---vqgeIpe
d1vq0a1  (  49 )    LVTPwLaekErWtLdIegngpIrrVvAqStseftVrgyVanpkVelplne
d1vzya1  (  51 )    MLGAmlkgddkLtVkIeGggpIgaIvAdAnAkGeVrAyVsnpqvhfdlna
                    aa        bbbbbbb      bbbbbbb    bbbbb           

                             110       120       130       140       150 
d1hw7a-  ( 103 )    --nAdlktLVg-nGyVvItitpsegeryqgvvgLegdtLaaCLedyfmrs
d1vq0a1  (  99 )    kgkfdVagAIg-qgvLrVvrdlglktpfvsqvpLvsGeIaeDLayYFavs
d1vzya1  ( 101 )    agkldVrrAVgtngtLsVvkdlglrefftgqveIvsGeLgdDFtyYLvss
                         aaaaa    bbbbbbb      bbbbbb      aaaaaaaaaaa

                             160       170       180       190       200 
d1hw7a-  ( 150 )    eqlpTrLfIrtgdvdg--kpaAggmLlqvmpaqnaqqddfdhlatlteti
d1vq0a1  ( 148 )    eqipSaFsIgVlVdsd-GVkIAGGFAVQiidr-tLeq-kvemIekniknL
d1vzya1  ( 151 )    eqvpSsVgVgVlVnpdntIlAAGGfIIQLm-p-gTddetitkIeqrlsqv
                        bbbbbbbbb     bbbbbbbbbbb          aaaaaaaa   

                             210       220       230       240   
d1hw7a-  ( 198 )    k--teellt-lpanevlwrlyh-----eeevtvydpqdvefkctc
d1vq0a1  ( 196 )    psIskLFqe-aepldVLerIFgekVgfvetaeIkyk         
d1vzya1  ( 199 )    episkLIqkgltPeeILeeVLgekPeiletmpVrf          
                       aaa      aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1hw7a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hw7a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Heat shock protein 33, Hsp33	Hsp33 domain	Escherichia coli [TaxId: 562]	view
d1vq0a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vq0a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Heat shock protein 33, Hsp33	Hsp33 domain	Thermotoga maritima [TaxId: 2336]	view
d1vzya1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vzya1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Heat shock protein 33, Hsp33	Hsp33 domain	Bacillus subtilis [TaxId: 1423]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1hw7a_	A	P0A6Y5	GO:0005737
d1hw7a_	A	P0A6Y5	GO:0006457
d1hw7a_	A	P0A6Y5	GO:0051082
d1vq0a1	A	Q9X1B4	GO:0005737
d1vq0a1	A	Q9X1B4	GO:0006457
d1vq0a1	A	Q9X1B4	GO:0042026
d1vq0a1	A	Q9X1B4	GO:0044183
d1vq0a1	A	Q9X1B4	GO:0051082
d1vq0a1	A	Q9X1B4	GO:0005737
d1vq0a1	A	Q9X1B4	GO:0006457
d1vq0a1	A	Q9X1B4	GO:0042026
d1vq0a1	A	Q9X1B4	GO:0044183
d1vq0a1	A	Q9X1B4	GO:0051082
d1vzya1	A	P37565	GO:0005737
d1vzya1	A	P37565	GO:0006457
d1vzya1	A	P37565	GO:0042026
d1vzya1	A	P37565	GO:0044183
d1vzya1	A	P37565	GO:0051082

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H	D	Q	L	H	R	Y	L	F	E	N	F	A	V	R	G	E	L	V	T	V	S	E	T	L	Q	Q	I	L	E	N	H	D	Y	P	Q	P	V	K	N	V	L	A	E	L	L	V	A	T	S	L	L	T	A	T	L	K	F	D	G	D	I	T	V	Q	L	Q	G	D	G	P	M	N	L	A	V	I	N	G	N	N	N	Q	Q	M	R	G	V	A	R	-	-	-	V	Q	G	E	I	P	E	-	-	N	A	D	L	K	T	L	V	G	-	N	G	Y	V	V	I	T	I	T	P	S	E	G	E	R	Y	Q	G	V	V	G	L	E	G	D	T	L	A	A	C	L	E	D	Y	F	M	R	S	E	Q	L	P	T	R	L	F	I	R	T	G	D	V	D	G	-	-	K	P	A	A	G	G	M	L	L	Q	V	M	P	A	Q	N	A	Q	Q	D	D	F	D	H	L	A	T	L	T	E	T	I	K	-	-	T	E	E	L	L	T	-	L	P	A	N	E	V	L	W	R	L	Y	H	-	-	-	-	-	E	E	E	V	T	V	Y	D	P	Q	D	V	E	F	K	C	T	C
-	-	M	I	Y	Y	G	T	M	F	D	H	K	V	R	F	S	I	V	R	M	R	E	V	V	E	E	A	R	N	R	H	A	L	S	Y	L	A	T	V	V	L	G	R	A	L	I	G	A	A	L	V	T	P	W	L	A	E	K	E	R	W	T	L	D	I	E	G	N	G	P	I	R	R	V	V	A	Q	S	T	S	E	F	T	V	R	G	Y	V	A	N	P	K	V	E	L	P	L	N	E	K	G	K	F	D	V	A	G	A	I	G	-	Q	G	V	L	R	V	V	R	D	L	G	L	K	T	P	F	V	S	Q	V	P	L	V	S	G	E	I	A	E	D	L	A	Y	Y	F	A	V	S	E	Q	I	P	S	A	F	S	I	G	V	L	V	D	S	D	-	G	V	K	I	A	G	G	F	A	V	Q	I	I	D	R	-	T	L	E	Q	-	K	V	E	M	I	E	K	N	I	K	N	L	P	S	I	S	K	L	F	Q	E	-	A	E	P	L	D	V	L	E	R	I	F	G	E	K	V	G	F	V	E	T	A	E	I	K	Y	K	-	-	-	-	-	-	-	-	-
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