PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1gd8a-  (  14 )    sshrlalyrnQAksLLthgritttvpkAkeLrgfVdhLIhlAkrgd--lh
d2cqma1  (  28 )          llrnlltglvrherieApwarvdeMrgyAeklidyGklgdtner
                           aaaaaaaaaa  bbbbbaaaaaaaaaaaaaaaaaaaa    aa

                             60        70        80        90        100 
d1gd8a-  (  62 )    ArrlVlrdLqdvklVrkLFdeIAprYrdrqggYTrvlklaerrrgdgapl
d2cqma1  (  72 )    AmrmAdfwltekdlipklFqvlAprYkdqtggytrmlqipnr-sldrakm
                    aaaaaaaa     aaaaaaa aaaa        bbbbb           b

                             110    
d1gd8a-  ( 112 )    AlVelve         
d2cqma1  ( 121 )    AvieYkGnclpplplp
                    bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1gd8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1gd8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Thermus thermophilus [TaxId: 274]		view
d2cqma1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2cqma1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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S	S	H	R	L	A	L	Y	R	N	Q	A	K	S	L	L	T	H	G	R	I	T	T	T	V	P	K	A	K	E	L	R	G	F	V	D	H	L	I	H	L	A	K	R	G	D	-	-	L	H	A	R	R	L	V	L	R	D	L	Q	D	V	K	L	V	R	K	L	F	D	E	I	A	P	R	Y	R	D	R	Q	G	G	Y	T	R	V	L	K	L	A	E	R	R	R	G	D	G	A	P	L	A	L	V	E	L	V	E	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	L	L	R	N	L	L	T	G	L	V	R	H	E	R	I	E	A	P	W	A	R	V	D	E	M	R	G	Y	A	E	K	L	I	D	Y	G	K	L	G	D	T	N	E	R	A	M	R	M	A	D	F	W	L	T	E	K	D	L	I	P	K	L	F	Q	V	L	A	P	R	Y	K	D	Q	T	G	G	Y	T	R	M	L	Q	I	P	N	R	-	S	L	D	R	A	K	M	A	V	I	E	Y	K	G	N	C	L	P	P	L	P	L	P

Member	Chain	UniProtKB	GO term
d1gd8a_	A	Q9Z9H5	GO:0003735
d1gd8a_	A	Q9Z9H5	GO:0005840
d1gd8a_	A	Q9Z9H5	GO:0006412
d1gd8a_	A	Q9Z9H5	GO:0022625
d1gd8a_	A	Q9Z9H5	GO:1990904
d2cqma1	A	Q9NRX2	GO:0003735
d2cqma1	A	Q9NRX2	GO:0005840
d2cqma1	A	Q9NRX2	GO:0006412

									10										20										30										40										50										60										70										80										90										100										110
S	S	H	R	L	A	L	Y	R	N	Q	A	K	S	L	L	T	H	G	R	I	T	T	T	V	P	K	A	K	E	L	R	G	F	V	D	H	L	I	H	L	A	K	R	G	D	-	-	L	H	A	R	R	L	V	L	R	D	L	Q	D	V	K	L	V	R	K	L	F	D	E	I	A	P	R	Y	R	D	R	Q	G	G	Y	T	R	V	L	K	L	A	E	R	R	R	G	D	G	A	P	L	A	L	V	E	L	V	E	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	L	L	R	N	L	L	T	G	L	V	R	H	E	R	I	E	A	P	W	A	R	V	D	E	M	R	G	Y	A	E	K	L	I	D	Y	G	K	L	G	D	T	N	E	R	A	M	R	M	A	D	F	W	L	T	E	K	D	L	I	P	K	L	F	Q	V	L	A	P	R	Y	K	D	Q	T	G	G	Y	T	R	M	L	Q	I	P	N	R	-	S	L	D	R	A	K	M	A	V	I	E	Y	K	G	N	C	L	P	P	L	P	L	P

									10										20										30										40										50										60										70										80										90										100										110
S	S	H	R	L	A	L	Y	R	N	Q	A	K	S	L	L	T	H	G	R	I	T	T	T	V	P	K	A	K	E	L	R	G	F	V	D	H	L	I	H	L	A	K	R	G	D	-	-	L	H	A	R	R	L	V	L	R	D	L	Q	D	V	K	L	V	R	K	L	F	D	E	I	A	P	R	Y	R	D	R	Q	G	G	Y	T	R	V	L	K	L	A	E	R	R	R	G	D	G	A	P	L	A	L	V	E	L	V	E	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	L	L	R	N	L	L	T	G	L	V	R	H	E	R	I	E	A	P	W	A	R	V	D	E	M	R	G	Y	A	E	K	L	I	D	Y	G	K	L	G	D	T	N	E	R	A	M	R	M	A	D	F	W	L	T	E	K	D	L	I	P	K	L	F	Q	V	L	A	P	R	Y	K	D	Q	T	G	G	Y	T	R	M	L	Q	I	P	N	R	-	S	L	D	R	A	K	M	A	V	I	E	Y	K	G	N	C	L	P	P	L	P	L	P

									10										20										30										40										50										60										70										80										90										100										110
S	S	H	R	L	A	L	Y	R	N	Q	A	K	S	L	L	T	H	G	R	I	T	T	T	V	P	K	A	K	E	L	R	G	F	V	D	H	L	I	H	L	A	K	R	G	D	-	-	L	H	A	R	R	L	V	L	R	D	L	Q	D	V	K	L	V	R	K	L	F	D	E	I	A	P	R	Y	R	D	R	Q	G	G	Y	T	R	V	L	K	L	A	E	R	R	R	G	D	G	A	P	L	A	L	V	E	L	V	E	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	L	L	R	N	L	L	T	G	L	V	R	H	E	R	I	E	A	P	W	A	R	V	D	E	M	R	G	Y	A	E	K	L	I	D	Y	G	K	L	G	D	T	N	E	R	A	M	R	M	A	D	F	W	L	T	E	K	D	L	I	P	K	L	F	Q	V	L	A	P	R	Y	K	D	Q	T	G	G	Y	T	R	M	L	Q	I	P	N	R	-	S	L	D	R	A	K	M	A	V	I	E	Y	K	G	N	C	L	P	P	L	P	L	P