PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1l5xa1  (   2 )     kILVTNDdgVhspGLrlLyqfAlslgdVdVVAPespksatglgiTlhkp
d2phja-  (   2 )    ptFLLVNDDGyfSpGInaLreaLkslgrVVVVAPdrnLsgvghsltftep
                      bbbb       aaaaaaaaaa     bbbbbb                

                             60        70        80        90        100 
d1l5xa1  (  51 )    lryevdLcgfrAiATsGtPSdTVylAtf-glg-rkYdIVLSGInlgDNTS
d2phja-  (  52 )    lk-mrkidtdfyTVidGtPADCVhlGyrvileekkPdLVLSGInegpnLG
                       bbb    bbbb    aaaaaaaaaa         bbbbbbb      

                             110       120       130       140       150 
d1l5xa1  ( 100 )    lqvIlsSGTLgAAfqAAllgIpALAYSayLenwnellnnkeAveigaVVs
d2phja-  ( 101 )    -editysGTVsGAmeGrilgIpSIAFSAfgre------nImfeeIAkVCv
                           aaaaaaaaaaa    bbbbbb             aaa  aaaa

                             160       170       180       190       200 
d1l5xa1  ( 151 )    stAsyvlkngpqgVdViSVNfPrrlgrgv-rAklvkAaklRyaqqvverv
d2phja-  ( 144 )    dIVkkvlnegIpedtYlNVNIPnlryeeikgikvTrqGkraykervfkyi
                    aaaaaaaaa      bbbbb           bbb            bbbb

                             210       220       230       240       250 
d1l5xa1  ( 201 )    dprgvryywlygrdl--apepeTDVyVVlkeggIAITpltlnlnavdahr
d2phja-  ( 194 )    dpygkpfywiaaeefGwhaeegtDYwAVl-ngyVSvTplhldltn-----
                         bbbb              aaaaaa    bbbbbb           

                             260     
d1l5xa1  ( 249 )    evddslnrveyInasLs
d2phja-  ( 238 )    -----ykvmksikyled

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1l5xa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1l5xa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	SurE homolog PAE2908 (SurE-alpha)	SurE-like	Pyrobaculum aerophilum [TaxId: 13773]		view
d2phja- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2phja- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Aquifex aeolicus [TaxId: 224324]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	T	F	L	L	V	N	D	D	G	Y	F	S	P	G	I	N	A	L	R	E	A	L	K	S	L	G	R	V	V	V	V	A	P	D	R	N	L	S	G	V	G	H	S	L	T	F	T	E	P	L	K	-	M	R	K	I	D	T	D	F	Y	T	V	I	D	G	T	P	A	D	C	V	H	L	G	Y	R	V	I	L	E	E	K	K	P	D	L	V	L	S	G	I	N	E	G	P	N	L	G	-	E	D	I	T	Y	S	G	T	V	S	G	A	M	E	G	R	I	L	G	I	P	S	I	A	F	S	A	F	G	R	E	-	-	-	-	-	-	N	I	M	F	E	E	I	A	K	V	C	V	D	I	V	K	K	V	L	N	E	G	I	P	E	D	T	Y	L	N	V	N	I	P	N	L	R	Y	E	E	I	K	G	I	K	V	T	R	Q	G	K	R	A	Y	K	E	R	V	F	K	Y	I	D	P	Y	G	K	P	F	Y	W	I	A	A	E	E	F	G	W	H	A	E	E	G	T	D	Y	W	A	V	L	-	N	G	Y	V	S	V	T	P	L	H	L	D	L	T	N	-	-	-	-	-	-	-	-	-	-	Y	K	V	M	K	S	I	K	Y	L	E	D

Member	Chain	UniProtKB	GO term

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P	T	F	L	L	V	N	D	D	G	Y	F	S	P	G	I	N	A	L	R	E	A	L	K	S	L	G	R	V	V	V	V	A	P	D	R	N	L	S	G	V	G	H	S	L	T	F	T	E	P	L	K	-	M	R	K	I	D	T	D	F	Y	T	V	I	D	G	T	P	A	D	C	V	H	L	G	Y	R	V	I	L	E	E	K	K	P	D	L	V	L	S	G	I	N	E	G	P	N	L	G	-	E	D	I	T	Y	S	G	T	V	S	G	A	M	E	G	R	I	L	G	I	P	S	I	A	F	S	A	F	G	R	E	-	-	-	-	-	-	N	I	M	F	E	E	I	A	K	V	C	V	D	I	V	K	K	V	L	N	E	G	I	P	E	D	T	Y	L	N	V	N	I	P	N	L	R	Y	E	E	I	K	G	I	K	V	T	R	Q	G	K	R	A	Y	K	E	R	V	F	K	Y	I	D	P	Y	G	K	P	F	Y	W	I	A	A	E	E	F	G	W	H	A	E	E	G	T	D	Y	W	A	V	L	-	N	G	Y	V	S	V	T	P	L	H	L	D	L	T	N	-	-	-	-	-	-	-	-	-	-	Y	K	V	M	K	S	I	K	Y	L	E	D

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P	T	F	L	L	V	N	D	D	G	Y	F	S	P	G	I	N	A	L	R	E	A	L	K	S	L	G	R	V	V	V	V	A	P	D	R	N	L	S	G	V	G	H	S	L	T	F	T	E	P	L	K	-	M	R	K	I	D	T	D	F	Y	T	V	I	D	G	T	P	A	D	C	V	H	L	G	Y	R	V	I	L	E	E	K	K	P	D	L	V	L	S	G	I	N	E	G	P	N	L	G	-	E	D	I	T	Y	S	G	T	V	S	G	A	M	E	G	R	I	L	G	I	P	S	I	A	F	S	A	F	G	R	E	-	-	-	-	-	-	N	I	M	F	E	E	I	A	K	V	C	V	D	I	V	K	K	V	L	N	E	G	I	P	E	D	T	Y	L	N	V	N	I	P	N	L	R	Y	E	E	I	K	G	I	K	V	T	R	Q	G	K	R	A	Y	K	E	R	V	F	K	Y	I	D	P	Y	G	K	P	F	Y	W	I	A	A	E	E	F	G	W	H	A	E	E	G	T	D	Y	W	A	V	L	-	N	G	Y	V	S	V	T	P	L	H	L	D	L	T	N	-	-	-	-	-	-	-	-	-	-	Y	K	V	M	K	S	I	K	Y	L	E	D

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P	T	F	L	L	V	N	D	D	G	Y	F	S	P	G	I	N	A	L	R	E	A	L	K	S	L	G	R	V	V	V	V	A	P	D	R	N	L	S	G	V	G	H	S	L	T	F	T	E	P	L	K	-	M	R	K	I	D	T	D	F	Y	T	V	I	D	G	T	P	A	D	C	V	H	L	G	Y	R	V	I	L	E	E	K	K	P	D	L	V	L	S	G	I	N	E	G	P	N	L	G	-	E	D	I	T	Y	S	G	T	V	S	G	A	M	E	G	R	I	L	G	I	P	S	I	A	F	S	A	F	G	R	E	-	-	-	-	-	-	N	I	M	F	E	E	I	A	K	V	C	V	D	I	V	K	K	V	L	N	E	G	I	P	E	D	T	Y	L	N	V	N	I	P	N	L	R	Y	E	E	I	K	G	I	K	V	T	R	Q	G	K	R	A	Y	K	E	R	V	F	K	Y	I	D	P	Y	G	K	P	F	Y	W	I	A	A	E	E	F	G	W	H	A	E	E	G	T	D	Y	W	A	V	L	-	N	G	Y	V	S	V	T	P	L	H	L	D	L	T	N	-	-	-	-	-	-	-	-	-	-	Y	K	V	M	K	S	I	K	Y	L	E	D