PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ig0a2  (   3 )    eecienperikigtdlinirnkmnlkelihPnedensTLLIlnqkIdipr
d1ig3a2  (  21 )    m------------------ehaftplePllptgnlkYCLVVlnqpLd---
                                              33        bbbbb         

                             60        70        80        90        100 
d1ig0a2  (  53 )    plFykIWklHdLkVCADGAAnrLydyLdddetlrikYlPnYIIGdldsLs
d1ig3a2  (  50 )    arFrhLWkkAlLrACAdGGAnhLydlTe---geresFlPeFVSGdfdsIr
                      aaaaaaa  bbbbb  aaaaaaa               bbbb      

                             110       120       130       140       150 
d1ig0a2  ( 103 )    ekVykyYrknkVtiIkQttqystdFtKCVnLISLhfnspeFrslisnnsn
d1ig3a2  (  97 )    peVkeyYtkkgCdlistpdqdhtdFTKCLqvLqrkIeek-----------
                    aaaaaaaaa   bbbb       aaaaaaaaaaaaaa             

                             160       170       180       190       200 
d1ig0a2  ( 157 )    hgIelekGIhtlyntmteslvfskvtpISLLALggiggrfdqtvhSitQl
d1ig3a2  ( 136 )    -----------------------elqVdVIVTLGglggrfdqimaSvnTl
                                                bbbbb      aaaaaaaaaaa

                             210     
d1ig0a2  ( 207 )    ytlsenAsYFkLcymtp
d1ig3a2  ( 163 )    fqAthiTp-vpIiIiQk
                    aa         bbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ig0a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ig0a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thiamin pyrophosphokinase, catalytic domain	Thiamin pyrophosphokinase, catalytic domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d1ig3a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ig3a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thiamin pyrophosphokinase, catalytic domain	Thiamin pyrophosphokinase, catalytic domain	Mouse (Mus musculus) [TaxId: 10090]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1ig0a2	A	P35202	GO:0004788
d1ig0a2	A	P35202	GO:0005524
d1ig0a2	A	P35202	GO:0005737
d1ig0a2	A	P35202	GO:0006772
d1ig0a2	A	P35202	GO:0009229
d1ig0a2	A	P35202	GO:0016301
d1ig0a2	A	P35202	GO:0016310
d1ig0a2	A	P35202	GO:0030975
d1ig0a2	A	P35202	GO:0042723
d1ig0a2	A	P35202	GO:0004788
d1ig0a2	A	P35202	GO:0005524
d1ig0a2	A	P35202	GO:0005737
d1ig0a2	A	P35202	GO:0006772
d1ig0a2	A	P35202	GO:0009229
d1ig0a2	A	P35202	GO:0016301
d1ig0a2	A	P35202	GO:0016310
d1ig0a2	A	P35202	GO:0030975
d1ig0a2	A	P35202	GO:0042723
d1ig3a2	A	Q9R0M5	GO:0004788
d1ig3a2	A	Q9R0M5	GO:0005524
d1ig3a2	A	Q9R0M5	GO:0005829
d1ig3a2	A	Q9R0M5	GO:0006772
d1ig3a2	A	Q9R0M5	GO:0009229
d1ig3a2	A	Q9R0M5	GO:0010510
d1ig3a2	A	Q9R0M5	GO:0016301
d1ig3a2	A	Q9R0M5	GO:0016310
d1ig3a2	A	Q9R0M5	GO:0030975
d1ig3a2	A	Q9R0M5	GO:0042723
d1ig3a2	A	Q9R0M5	GO:0042802
d1ig3a2	A	Q9R0M5	GO:0141200
d1ig3a2	A	Q9R0M5	GO:0004788
d1ig3a2	A	Q9R0M5	GO:0005524
d1ig3a2	A	Q9R0M5	GO:0005829
d1ig3a2	A	Q9R0M5	GO:0006772
d1ig3a2	A	Q9R0M5	GO:0009229
d1ig3a2	A	Q9R0M5	GO:0010510
d1ig3a2	A	Q9R0M5	GO:0016301
d1ig3a2	A	Q9R0M5	GO:0016310
d1ig3a2	A	Q9R0M5	GO:0030975
d1ig3a2	A	Q9R0M5	GO:0042723
d1ig3a2	A	Q9R0M5	GO:0042802
d1ig3a2	A	Q9R0M5	GO:0141200

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