PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1m5wa-  (   2 )    aeLlLGVnIdhiAtlrnargtaypdPvqaAfiAEqagAdgITVHLRedrr
d6w6aa1  (   1 )     mtqLSVnVnkIAvlrnsrgga-pdVvraAqaCLdAgAhGITVHPrpdrr
                       bbbbb aaaaaaaa        aaaaaaaaa     bbbb       

                             60        70        80        90        100 
d1m5wa-  (  52 )    HItdrDVriLrqtL---dtrMnLeMaVt------eeMlaiAvetkPhfCC
d6w6aa1  (  50 )    HItaedVlaLStlTrargveFNIeGnPfapprgYpgLlpLCaqTrPaQAT
                       aaaaaaaaaa      bbbbbb           aaaaaaaa   bbb

                             110       120       130       140       150 
d1m5wa-  (  93 )    LVpEkrqevtteGGLdVagqrdkMrdACkrLadagIqVsLFIdAdeeqIk
d6w6aa1  ( 101 )    LVpDgdgq-tsdhGFdFerDAerLrplVaeLkamgCrVSLFVdAgnplLe
                    b                   aaaaaaaaaaaa    bbbbbb        

                             160       170       180       190       200 
d1m5wa-  ( 143 )    AAaeVgApfIEIhTGcYadAktdaeqaqelarIakAAtfAaslgLkVnAG
d6w6aa1  ( 151 )    qAaeVgAdrVELyTGpYaeahaagdAaamlelFAtAArrAqamgLgVNAG
                    aaaa    bbbbb aaaaa       aaaaaaaaaaaaaaa    bbbbb

                             210       220       230       240       250 
d1m5wa-  ( 193 )    hgLtyhnVkaIAa-IpeMheLNIghaIigravmtglkdAVaeMkrlMlea
d6w6aa1  ( 201 )    hdLsqdnLrdFLahVpdVlEVSIghaLigealydgldaTVrgYlall   
                           aaaaa     bbbbbb aaaaaaaaaa aaaaaaaaaaa    

                      
d1m5wa-  ( 242 )    rg
d6w6aa1

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1m5wa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1m5wa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	Escherichia coli [TaxId: 562]		view
d6w6aa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6w6aa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Stenotrophomonas maltophilia [TaxId: 522373]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1m5wa_	A	P0A794	GO:0005737
d1m5wa_	A	P0A794	GO:0005829
d1m5wa_	A	P0A794	GO:0008615
d1m5wa_	A	P0A794	GO:0016740
d1m5wa_	A	P0A794	GO:0016769
d1m5wa_	A	P0A794	GO:0033856
d1m5wa_	A	P0A794	GO:0042802

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-	M	T	Q	L	S	V	N	V	N	K	I	A	V	L	R	N	S	R	G	G	A	-	P	D	V	V	R	A	A	Q	A	C	L	D	A	G	A	H	G	I	T	V	H	P	R	P	D	R	R	H	I	T	A	E	D	V	L	A	L	S	T	L	T	R	A	R	G	V	E	F	N	I	E	G	N	P	F	A	P	P	R	G	Y	P	G	L	L	P	L	C	A	Q	T	R	P	A	Q	A	T	L	V	P	D	G	D	G	Q	-	T	S	D	H	G	F	D	F	E	R	D	A	E	R	L	R	P	L	V	A	E	L	K	A	M	G	C	R	V	S	L	F	V	D	A	G	N	P	L	L	E	Q	A	A	E	V	G	A	D	R	V	E	L	Y	T	G	P	Y	A	E	A	H	A	A	G	D	A	A	A	M	L	E	L	F	A	T	A	A	R	R	A	Q	A	M	G	L	G	V	N	A	G	H	D	L	S	Q	D	N	L	R	D	F	L	A	H	V	P	D	V	L	E	V	S	I	G	H	A	L	I	G	E	A	L	Y	D	G	L	D	A	T	V	R	G	Y	L	A	L	L	-	-	-	-	-

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-	M	T	Q	L	S	V	N	V	N	K	I	A	V	L	R	N	S	R	G	G	A	-	P	D	V	V	R	A	A	Q	A	C	L	D	A	G	A	H	G	I	T	V	H	P	R	P	D	R	R	H	I	T	A	E	D	V	L	A	L	S	T	L	T	R	A	R	G	V	E	F	N	I	E	G	N	P	F	A	P	P	R	G	Y	P	G	L	L	P	L	C	A	Q	T	R	P	A	Q	A	T	L	V	P	D	G	D	G	Q	-	T	S	D	H	G	F	D	F	E	R	D	A	E	R	L	R	P	L	V	A	E	L	K	A	M	G	C	R	V	S	L	F	V	D	A	G	N	P	L	L	E	Q	A	A	E	V	G	A	D	R	V	E	L	Y	T	G	P	Y	A	E	A	H	A	A	G	D	A	A	A	M	L	E	L	F	A	T	A	A	R	R	A	Q	A	M	G	L	G	V	N	A	G	H	D	L	S	Q	D	N	L	R	D	F	L	A	H	V	P	D	V	L	E	V	S	I	G	H	A	L	I	G	E	A	L	Y	D	G	L	D	A	T	V	R	G	Y	L	A	L	L	-	-	-	-	-

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