PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1uz5a1  ( 329 )     igkkvA-lk-hvfs---rrqflpVkleg------dlAvpilk-gsgavt
d1wu2a1  ( 325 )     evkvkAiLqddIpSqlgryefikIyyen------giArvikkkgsgils
d2nqra1  ( 327 )    lparqrVrTasrLkKtpgrldfQrGvlqrnad-geleVttTghqgshifs
d6fgca3  ( 654 )     ptiikArlscdvkldp-rpeyhrCiltwhhqeplPwAqstg------lm
                       bbbbbb           bbbbbbbb        bbbb          

                             60        70        80       
d1uz5a1  ( 371 )    sfidadGfveipet-------degeeveVtlfkg---w
d1wu2a1  ( 368 )    SllaSnAyLeIpe---dsegyrrgeeVwITly      
d2nqra1  ( 376 )    SfslGnCfIVLer---drgnVevgewVeVepFnalfgg
d6fgca3  ( 702 )    smrsanGllmlppkteqyvelhkgevvdvmvigrl   
                    aaaa  bbbbb              bbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1uz5a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1uz5a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain	MoeA C-terminal domain-like	Pyrococcus horikoshii, PH0582 [TaxId: 53953]	view
d1wu2a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wu2a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain	MoeA C-terminal domain-like	Pyrococcus horikoshii, PH1647 [TaxId: 53953]	view
d2nqra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2nqra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain	MoeA C-terminal domain-like	Escherichia coli [TaxId: 562]	view
d6fgca3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6fgca3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Norway rat (Rattus norvegicus) [TaxId: 10116]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1uz5a1	A	O58335	GO:0005737
d1uz5a1	A	O58335	GO:0006777
d1uz5a1	A	O58335	GO:0018315
d1uz5a1	A	O58335	GO:0032324
d1uz5a1	A	O58335	GO:0061599
d1uz5a1	A	O58335	GO:0005737
d1uz5a1	A	O58335	GO:0006777
d1uz5a1	A	O58335	GO:0018315
d1uz5a1	A	O58335	GO:0032324
d1uz5a1	A	O58335	GO:0061599
d1uz5a1	A	O58335	GO:0005737
d1uz5a1	A	O58335	GO:0006777
d1uz5a1	A	O58335	GO:0018315
d1uz5a1	A	O58335	GO:0032324
d1uz5a1	A	O58335	GO:0061599
d1wu2a1	A	O59354	GO:0005737
d1wu2a1	A	O59354	GO:0006777
d1wu2a1	A	O59354	GO:0018315
d1wu2a1	A	O59354	GO:0032324
d1wu2a1	A	O59354	GO:0061599
d1wu2a1	A	O59354	GO:0005737
d1wu2a1	A	O59354	GO:0006777
d1wu2a1	A	O59354	GO:0018315
d1wu2a1	A	O59354	GO:0032324
d1wu2a1	A	O59354	GO:0061599
d2nqra1	A	P12281	GO:0005515
d2nqra1	A	P12281	GO:0005737
d2nqra1	A	P12281	GO:0005829
d2nqra1	A	P12281	GO:0006777
d2nqra1	A	P12281	GO:0016740
d2nqra1	A	P12281	GO:0032324
d2nqra1	A	P12281	GO:0042802
d2nqra1	A	P12281	GO:0042803
d2nqra1	A	P12281	GO:0046872
d2nqra1	A	P12281	GO:0061599
d2nqra1	A	P12281	GO:0005515
d2nqra1	A	P12281	GO:0005737
d2nqra1	A	P12281	GO:0005829
d2nqra1	A	P12281	GO:0006777
d2nqra1	A	P12281	GO:0016740
d2nqra1	A	P12281	GO:0032324
d2nqra1	A	P12281	GO:0042802
d2nqra1	A	P12281	GO:0042803
d2nqra1	A	P12281	GO:0046872
d2nqra1	A	P12281	GO:0061599

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