PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ig0a1  ( 224 )    tdliflikkngtlieydpqfrntCIgnCGLlPigeaTlVkeTrgLkwdvk
d1ig3a1  ( 179 )    dsliylLqpgkhrlhVdtg---megswCGLiPvgqpCnqVtTtGLkwnlt
                     bbbbbb    bbbb         bbbbbbb     bbbbbbb       

                             60        70        80        90     
d1ig0a1  ( 274 )    nwpTsvvtgrvsssNrFvgdncCfIdTkddIiLnVeifvdklidfl
d1ig3a1  ( 226 )    ndvLGfgt-lvstsNtydgsglVtVeTdhpLlWtmAiks       
                     bbb       bbbb      bbbbbb   bbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ig0a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ig0a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thiamin pyrophosphokinase, substrate-binding domain	Thiamin pyrophosphokinase, substrate-binding domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d1ig3a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ig3a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thiamin pyrophosphokinase, substrate-binding domain	Thiamin pyrophosphokinase, substrate-binding domain	Mouse (Mus musculus) [TaxId: 10090]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90
T	D	L	I	F	L	I	K	K	N	G	T	L	I	E	Y	D	P	Q	F	R	N	T	C	I	G	N	C	G	L	L	P	I	G	E	A	T	L	V	K	E	T	R	G	L	K	W	D	V	K	N	W	P	T	S	V	V	T	G	R	V	S	S	S	N	R	F	V	G	D	N	C	C	F	I	D	T	K	D	D	I	I	L	N	V	E	I	F	V	D	K	L	I	D	F	L
D	S	L	I	Y	L	L	Q	P	G	K	H	R	L	H	V	D	T	G	-	-	-	M	E	G	S	W	C	G	L	I	P	V	G	Q	P	C	N	Q	V	T	T	T	G	L	K	W	N	L	T	N	D	V	L	G	F	G	T	-	L	V	S	T	S	N	T	Y	D	G	S	G	L	V	T	V	E	T	D	H	P	L	L	W	T	M	A	I	K	S	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1ig0a1	A	P35202	GO:0004788
d1ig0a1	A	P35202	GO:0005524
d1ig0a1	A	P35202	GO:0005737
d1ig0a1	A	P35202	GO:0006772
d1ig0a1	A	P35202	GO:0009229
d1ig0a1	A	P35202	GO:0016301
d1ig0a1	A	P35202	GO:0016310
d1ig0a1	A	P35202	GO:0030975
d1ig0a1	A	P35202	GO:0042723
d1ig0a1	A	P35202	GO:0004788
d1ig0a1	A	P35202	GO:0005524
d1ig0a1	A	P35202	GO:0005737
d1ig0a1	A	P35202	GO:0006772
d1ig0a1	A	P35202	GO:0009229
d1ig0a1	A	P35202	GO:0016301
d1ig0a1	A	P35202	GO:0016310
d1ig0a1	A	P35202	GO:0030975
d1ig0a1	A	P35202	GO:0042723
d1ig3a1	A	Q9R0M5	GO:0004788
d1ig3a1	A	Q9R0M5	GO:0005524
d1ig3a1	A	Q9R0M5	GO:0005829
d1ig3a1	A	Q9R0M5	GO:0006772
d1ig3a1	A	Q9R0M5	GO:0009229
d1ig3a1	A	Q9R0M5	GO:0010510
d1ig3a1	A	Q9R0M5	GO:0016301
d1ig3a1	A	Q9R0M5	GO:0016310
d1ig3a1	A	Q9R0M5	GO:0030975
d1ig3a1	A	Q9R0M5	GO:0042723
d1ig3a1	A	Q9R0M5	GO:0042802
d1ig3a1	A	Q9R0M5	GO:0141200
d1ig3a1	A	Q9R0M5	GO:0004788
d1ig3a1	A	Q9R0M5	GO:0005524
d1ig3a1	A	Q9R0M5	GO:0005829
d1ig3a1	A	Q9R0M5	GO:0006772
d1ig3a1	A	Q9R0M5	GO:0009229
d1ig3a1	A	Q9R0M5	GO:0010510
d1ig3a1	A	Q9R0M5	GO:0016301
d1ig3a1	A	Q9R0M5	GO:0016310
d1ig3a1	A	Q9R0M5	GO:0030975
d1ig3a1	A	Q9R0M5	GO:0042723
d1ig3a1	A	Q9R0M5	GO:0042802
d1ig3a1	A	Q9R0M5	GO:0141200

									10										20										30										40										50										60										70										80										90
T	D	L	I	F	L	I	K	K	N	G	T	L	I	E	Y	D	P	Q	F	R	N	T	C	I	G	N	C	G	L	L	P	I	G	E	A	T	L	V	K	E	T	R	G	L	K	W	D	V	K	N	W	P	T	S	V	V	T	G	R	V	S	S	S	N	R	F	V	G	D	N	C	C	F	I	D	T	K	D	D	I	I	L	N	V	E	I	F	V	D	K	L	I	D	F	L
D	S	L	I	Y	L	L	Q	P	G	K	H	R	L	H	V	D	T	G	-	-	-	M	E	G	S	W	C	G	L	I	P	V	G	Q	P	C	N	Q	V	T	T	T	G	L	K	W	N	L	T	N	D	V	L	G	F	G	T	-	L	V	S	T	S	N	T	Y	D	G	S	G	L	V	T	V	E	T	D	H	P	L	L	W	T	M	A	I	K	S	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90
T	D	L	I	F	L	I	K	K	N	G	T	L	I	E	Y	D	P	Q	F	R	N	T	C	I	G	N	C	G	L	L	P	I	G	E	A	T	L	V	K	E	T	R	G	L	K	W	D	V	K	N	W	P	T	S	V	V	T	G	R	V	S	S	S	N	R	F	V	G	D	N	C	C	F	I	D	T	K	D	D	I	I	L	N	V	E	I	F	V	D	K	L	I	D	F	L
D	S	L	I	Y	L	L	Q	P	G	K	H	R	L	H	V	D	T	G	-	-	-	M	E	G	S	W	C	G	L	I	P	V	G	Q	P	C	N	Q	V	T	T	T	G	L	K	W	N	L	T	N	D	V	L	G	F	G	T	-	L	V	S	T	S	N	T	Y	D	G	S	G	L	V	T	V	E	T	D	H	P	L	L	W	T	M	A	I	K	S	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90
T	D	L	I	F	L	I	K	K	N	G	T	L	I	E	Y	D	P	Q	F	R	N	T	C	I	G	N	C	G	L	L	P	I	G	E	A	T	L	V	K	E	T	R	G	L	K	W	D	V	K	N	W	P	T	S	V	V	T	G	R	V	S	S	S	N	R	F	V	G	D	N	C	C	F	I	D	T	K	D	D	I	I	L	N	V	E	I	F	V	D	K	L	I	D	F	L
D	S	L	I	Y	L	L	Q	P	G	K	H	R	L	H	V	D	T	G	-	-	-	M	E	G	S	W	C	G	L	I	P	V	G	Q	P	C	N	Q	V	T	T	T	G	L	K	W	N	L	T	N	D	V	L	G	F	G	T	-	L	V	S	T	S	N	T	Y	D	G	S	G	L	V	T	V	E	T	D	H	P	L	L	W	T	M	A	I	K	S	-	-	-	-	-	-	-