PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1qwza1  (  31 )    edkqeranyekLqqkFqmlmskhqahvrpQFesLekiNkdIvGWIkLsgt
d1t2wa-  (  62 )                               kpqipkdks---kvAgyIeIpdA
d5yfka-  (  33 )     yytdsrdYdnlrslSPlsspeehkqdaeseknLkniNpdYrFWIkVegT
                                                              bbbb    

                             60        70        80        90        100 
d1qwza1  (  81 )    sLnYPVLqgktnhdYlnlDFerehrrkGSIFMDfrNelknLnhNTILyGH
d1t2wa-  (  82 )    dIkepVyPGpatpeQLnr---------gVSFaeenEsLd--dqnIsIAGh
d5yfka-  (  88 )    nIdFPVVqgkdndfYlhhnFnkekSfSGSIFVdSeNnlnd-DsNIVVyGh
                      bbbbb                      bb            bbbbb  

                             110       120       130       140       150 
d1qwza1  ( 131 )    hvgd--ntMFdVLedYlkqsfYekhkiIeFdNkygkYqLqVFSAyktttk
d1t2wa-  ( 121 )    tfidrpnyQFtnLkaAk------kgSmVyFkVgnetrkYkMtsirdvkpt
d5yfka-  ( 137 )    Nmrn--dtMFAqIkhFknenfFnankyVtLyregkkstFeIFSVYqenak
                                333           bbbbbb  bbbbbbbbbbbbb   

                             160       170       180       190       200 
d1qwza1  ( 179 )    d--nyirtdFendqdYqqfLdeTkrkSvInSd-VnVtvkdrIMTLSTced
d1t2wa-  ( 165 )    ----------------dvgvldeqk------------gkdkQLtLitAdd
d5yfka-  ( 185 )    dLeseiktkFsnkedYekYLkeQeskSlfkrdgIdLnsndrILTLITsGy
                                                             bbbbbb   

                             210       220 
d1qwza1  ( 226 )    ay---settkrIvVVAkIikvs
d1t2wa-  ( 187 )    ynektgvwekrkiFVAtevk  
d5yfka-  ( 235 )    df-----vnArIVVVAkeid  
                             bbbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1qwza1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1qwza1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sortase B	Sortase	Staphylococcus aureus [TaxId: 1280]	view
d1t2wa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1t2wa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sortase A	Sortase	Staphylococcus aureus [TaxId: 1280]	view
d5yfka- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5yfka- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Clostridium perfringens [TaxId: 195102]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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