PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1g9la1  (   6 )               aaaatpavrtvpqykyaagvrnpqqhlnaqpqvtmqqpa
d1i2ta-  (1009 )                                                      
d1ifwa1  (   6 )              prnand----------------------------------
d1nmra1  (   3 )             slasqgq----------------------------------
d6h7aa1  ( 482 )    lppItpqeLe----------------------------------------
                                                                      

                             60        70        80        90        100 
d1g9la1  (  45 )    vhvqgqepltasmlasappqeqkqmlGerlfpliqamh--ptlAgkitgM
d1i2ta-  (1009 )                         hrqalGerLyprVqamq--pafAskItgm
d1ifwa1  (  12 )    --------nnqfy-----qqkqrqalgeqlykkvsaktsneeAAgkitgm
d1nmra1  (  10 )    --------nlstvlanltpeqqknvlgerlynhivain--paAAakvtgm
d6h7aa1  ( 492 )    ----------sms-----pqeqraaLgdrLflkVyeia--pelApkItgm
                                          aaaaaaaaaaaaa        aaaaaaa

                             110       120       130       140       150 
d1g9la1  (  93 )    lleidnsellhMlespeslrskvdeAvavlqahqakeaaqkavnsatgvp
d1i2ta-  (1036 )    LlelspaqLllLlasedsLrarVdeameliiahg                
d1ifwa1  (  49 )    ildlppqevfpllesdelFeqhykeAsaayesfkkeqeqqteq-------
d1nmra1  (  50 )    ll--emdnGeilnlldt--pglldaKvqeAlevlnrhmnv          
d6h7aa1  ( 525 )    FlemkpkeAyeLlndqkrLeerVteAlcvlkahqt---------------
                          aaaaaa     aaaaaaaaaaaaaaa                  

                      
d1g9la1  ( 143 )    tv
d1i2ta-               
d1ifwa1  (  92 )    -a
d1nmra1               
d6h7aa1  ( 560 )    -a

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1g9la1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1g9la1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	poly(A) binding protein	PABC (PABP) domain	Human (Homo sapiens) [TaxId: 9606]	view
d1i2ta- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1i2ta- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	hyperplastic discs protein	PABC (PABP) domain	Human (Homo sapiens) [TaxId: 9606]	view
d1ifwa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ifwa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	poly(A) binding protein	PABC (PABP) domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d1nmra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nmra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	poly(A) binding protein	PABC (PABP) domain	Trypanosoma cruzi [TaxId: 5693]	view
d6h7aa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6h7aa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Leishmania major [TaxId: 5664]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1i2ta_	A	O95071	GO:0003723

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	H	R	Q	A	L	G	E	R	L	Y	P	R	V	Q	A	M	Q	-	-	P	A	F	A	S	K	I	T	G	M	L	L	E	L	S	P	A	Q	L	L	L	L	L	A	S	E	D	S	L	R	A	R	V	D	E	A	M	E	L	I	I	A	H	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	-	-	-	-	-	-	-	-	P	R	N	A	N	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	N	Q	F	Y	-	-	-	-	-	Q	Q	K	Q	R	Q	A	L	G	E	Q	L	Y	K	K	V	S	A	K	T	S	N	E	E	A	A	G	K	I	T	G	M	I	L	D	L	P	P	Q	E	V	F	P	L	L	E	S	D	E	L	F	E	Q	H	Y	K	E	A	S	A	A	Y	E	S	F	K	K	E	Q	E	Q	Q	T	E	Q	-	-	-	-	-	-	-	-	A
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