PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1h9ea-  (   1 )    p-eFledPs--vltkdklkselvannvt-lpageqrkdvYvqlYlqhltA
d1h9fa-  (   1 )    rqedkddldvteltnedlldqlvkygvnPgpivgttrklyekkllklR-e
                                    aaaaaaaaa             aaaaaaaaa   

                             60  
d1h9ea-  (  47 )    rnrpplpagt
d1h9fa-  (  50 )    qgtesr--ss

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1h9ea- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1h9ea- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thymopoietin, LAP2	LEM domain	Human (Homo sapiens) [TaxId: 9606]		view
d1h9fa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1h9fa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thymopoietin, LAP2	LEM domain	Human (Homo sapiens) [TaxId: 9606]		view

Domain ID	Name
d7ndyg-	7ndy G:

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60
P	-	E	F	L	E	D	P	S	-	-	V	L	T	K	D	K	L	K	S	E	L	V	A	N	N	V	T	-	L	P	A	G	E	Q	R	K	D	V	Y	V	Q	L	Y	L	Q	H	L	T	A	R	N	R	P	P	L	P	A	G	T
R	Q	E	D	K	D	D	L	D	V	T	E	L	T	N	E	D	L	L	D	Q	L	V	K	Y	G	V	N	P	G	P	I	V	G	T	T	R	K	L	Y	E	K	K	L	L	K	L	R	-	E	Q	G	T	E	S	R	-	-	S	S

Member	Chain	UniProtKB	GO term
d1h9ea_	A	P42166	GO:0003677

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P	-	E	F	L	E	D	P	S	-	-	V	L	T	K	D	K	L	K	S	E	L	V	A	N	N	V	T	-	L	P	A	G	E	Q	R	K	D	V	Y	V	Q	L	Y	L	Q	H	L	T	A	R	N	R	P	P	L	P	A	G	T
R	Q	E	D	K	D	D	L	D	V	T	E	L	T	N	E	D	L	L	D	Q	L	V	K	Y	G	V	N	P	G	P	I	V	G	T	T	R	K	L	Y	E	K	K	L	L	K	L	R	-	E	Q	G	T	E	S	R	-	-	S	S

									10										20										30										40										50										60
P	-	E	F	L	E	D	P	S	-	-	V	L	T	K	D	K	L	K	S	E	L	V	A	N	N	V	T	-	L	P	A	G	E	Q	R	K	D	V	Y	V	Q	L	Y	L	Q	H	L	T	A	R	N	R	P	P	L	P	A	G	T
R	Q	E	D	K	D	D	L	D	V	T	E	L	T	N	E	D	L	L	D	Q	L	V	K	Y	G	V	N	P	G	P	I	V	G	T	T	R	K	L	Y	E	K	K	L	L	K	L	R	-	E	Q	G	T	E	S	R	-	-	S	S

									10										20										30										40										50										60
P	-	E	F	L	E	D	P	S	-	-	V	L	T	K	D	K	L	K	S	E	L	V	A	N	N	V	T	-	L	P	A	G	E	Q	R	K	D	V	Y	V	Q	L	Y	L	Q	H	L	T	A	R	N	R	P	P	L	P	A	G	T
R	Q	E	D	K	D	D	L	D	V	T	E	L	T	N	E	D	L	L	D	Q	L	V	K	Y	G	V	N	P	G	P	I	V	G	T	T	R	K	L	Y	E	K	K	L	L	K	L	R	-	E	Q	G	T	E	S	R	-	-	S	S