PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1e8ca1  (   3 )        rnLrdLLapwVpdAp--sraLre-tldSrvAaagDLFvAvvghqad
d4cvka1  (   1 )    mleplrLsqLtvaLdArligedavFsavstdSraIgpgeLFIAlsgp-fd
                              a                            bbb        

                             60        70        80        90        100 
d1e8ca1  (  47 )    grryipqAiaqgVaAIIAeAkdeatdgeirehgvPvIyLsqLnerlsala
d4cvka1  (  51 )    gHdyLaeVaakgAvAALVe-------revaAp-lpQLlV-dTraAlgrLg
                    3333aaaaaa    bbbb                 bbb   aaaaaaaaa

                           
d1e8ca1  (  98 )    grfyh-e
d4cvka1  (  94 )    alnrrkf
                    aaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1e8ca1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1e8ca1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	UDP-N-acetylmuramyl tripeptide synthetase MurE	MurE/MurF N-terminal domain	Escherichia coli [TaxId: 562]		view
d4cvka1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4cvka1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Pseudomonas aeruginosa, PA01 [TaxId: 208964]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	L	E	P	L	R	L	S	Q	L	T	V	A	L	D	A	R	L	I	G	E	D	A	V	F	S	A	V	S	T	D	S	R	A	I	G	P	G	E	L	F	I	A	L	S	G	P	-	F	D	G	H	D	Y	L	A	E	V	A	A	K	G	A	V	A	A	L	V	E	-	-	-	-	-	-	-	R	E	V	A	A	P	-	L	P	Q	L	L	V	-	D	T	R	A	A	L	G	R	L	G	A	L	N	R	R	K	F

Member	Chain	UniProtKB	GO term
d1e8ca1	A	P22188	GO:0000287
d1e8ca1	A	P22188	GO:0005515
d1e8ca1	A	P22188	GO:0005524
d1e8ca1	A	P22188	GO:0005737
d1e8ca1	A	P22188	GO:0005829
d1e8ca1	A	P22188	GO:0008360
d1e8ca1	A	P22188	GO:0008765
d1e8ca1	A	P22188	GO:0009058
d1e8ca1	A	P22188	GO:0009252
d1e8ca1	A	P22188	GO:0016874
d1e8ca1	A	P22188	GO:0016881
d1e8ca1	A	P22188	GO:0051301
d1e8ca1	A	P22188	GO:0071555
d1e8ca1	A	P22188	GO:0000287
d1e8ca1	A	P22188	GO:0005515
d1e8ca1	A	P22188	GO:0005524
d1e8ca1	A	P22188	GO:0005737
d1e8ca1	A	P22188	GO:0005829
d1e8ca1	A	P22188	GO:0008360
d1e8ca1	A	P22188	GO:0008765
d1e8ca1	A	P22188	GO:0009058
d1e8ca1	A	P22188	GO:0009252
d1e8ca1	A	P22188	GO:0016874
d1e8ca1	A	P22188	GO:0016881
d1e8ca1	A	P22188	GO:0051301
d1e8ca1	A	P22188	GO:0071555
d1e8ca1	A	P22188	GO:0000287
d1e8ca1	A	P22188	GO:0005515
d1e8ca1	A	P22188	GO:0005524
d1e8ca1	A	P22188	GO:0005737
d1e8ca1	A	P22188	GO:0005829
d1e8ca1	A	P22188	GO:0008360
d1e8ca1	A	P22188	GO:0008765
d1e8ca1	A	P22188	GO:0009058
d1e8ca1	A	P22188	GO:0009252
d1e8ca1	A	P22188	GO:0016874
d1e8ca1	A	P22188	GO:0016881
d1e8ca1	A	P22188	GO:0051301
d1e8ca1	A	P22188	GO:0071555
d1e8ca1	A	P22188	GO:0000287
d1e8ca1	A	P22188	GO:0005515
d1e8ca1	A	P22188	GO:0005524
d1e8ca1	A	P22188	GO:0005737
d1e8ca1	A	P22188	GO:0005829
d1e8ca1	A	P22188	GO:0008360
d1e8ca1	A	P22188	GO:0008765
d1e8ca1	A	P22188	GO:0009058
d1e8ca1	A	P22188	GO:0009252
d1e8ca1	A	P22188	GO:0016874
d1e8ca1	A	P22188	GO:0016881
d1e8ca1	A	P22188	GO:0051301
d1e8ca1	A	P22188	GO:0071555

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M	L	E	P	L	R	L	S	Q	L	T	V	A	L	D	A	R	L	I	G	E	D	A	V	F	S	A	V	S	T	D	S	R	A	I	G	P	G	E	L	F	I	A	L	S	G	P	-	F	D	G	H	D	Y	L	A	E	V	A	A	K	G	A	V	A	A	L	V	E	-	-	-	-	-	-	-	R	E	V	A	A	P	-	L	P	Q	L	L	V	-	D	T	R	A	A	L	G	R	L	G	A	L	N	R	R	K	F

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M	L	E	P	L	R	L	S	Q	L	T	V	A	L	D	A	R	L	I	G	E	D	A	V	F	S	A	V	S	T	D	S	R	A	I	G	P	G	E	L	F	I	A	L	S	G	P	-	F	D	G	H	D	Y	L	A	E	V	A	A	K	G	A	V	A	A	L	V	E	-	-	-	-	-	-	-	R	E	V	A	A	P	-	L	P	Q	L	L	V	-	D	T	R	A	A	L	G	R	L	G	A	L	N	R	R	K	F

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M	L	E	P	L	R	L	S	Q	L	T	V	A	L	D	A	R	L	I	G	E	D	A	V	F	S	A	V	S	T	D	S	R	A	I	G	P	G	E	L	F	I	A	L	S	G	P	-	F	D	G	H	D	Y	L	A	E	V	A	A	K	G	A	V	A	A	L	V	E	-	-	-	-	-	-	-	R	E	V	A	A	P	-	L	P	Q	L	L	V	-	D	T	R	A	A	L	G	R	L	G	A	L	N	R	R	K	F