PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1exka-  (   1 )    gvtkeiriptleeCdvChGsGAkpgtqpqtCptChgsgqvqmrq--gf-f
d1nlta3  ( 139 )             kqilÇkeÇegrGGkkg-avkkÇtsÇngqGikfvtrqmgpmi
                              bbb                          bbbbb     b

                             60        70        80    
d1exka-  (  48 )    Avqqt-CphCqgrGtlik--dpCnkChGhGrvers
d1nlta3  ( 179 )    qrfqteÇdvÇhgtGdiidpkdrçksçngkkvene 
                    bbbb                          bbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1exka- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1exka- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cysteine-rich domain of the chaperone protein DnaJ	DnaJ/Hsp40 cysteine-rich domain	Escherichia coli [TaxId: 562]		view
d1nlta3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nlta3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain	DnaJ/Hsp40 cysteine-rich domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	V	T	K	E	I	R	I	P	T	L	E	E	C	D	V	C	H	G	S	G	A	K	P	G	T	Q	P	Q	T	C	P	T	C	H	G	S	G	Q	V	Q	M	R	Q	-	-	G	F	-	F	A	V	Q	Q	T	-	C	P	H	C	Q	G	R	G	T	L	I	K	-	-	D	P	C	N	K	C	H	G	H	G	R	V	E	R	S
-	-	-	-	-	-	-	-	-	K	Q	I	L	C	K	E	C	E	G	R	G	G	K	K	G	-	A	V	K	K	C	T	S	C	N	G	Q	G	I	K	F	V	T	R	Q	M	G	P	M	I	Q	R	F	Q	T	E	C	D	V	C	H	G	T	G	D	I	I	D	P	K	D	R	C	K	S	C	N	G	K	K	V	E	N	E	-

Member	Chain	UniProtKB	GO term
d1exka_	A	P08622	GO:0031072
d1exka_	A	P08622	GO:0051082
d1nlta3	A	P25491	GO:0006457
d1nlta3	A	P25491	GO:0030544
d1nlta3	A	P25491	GO:0031072
d1nlta3	A	P25491	GO:0051082
d1nlta3	A	P25491	GO:0006457
d1nlta3	A	P25491	GO:0030544
d1nlta3	A	P25491	GO:0031072
d1nlta3	A	P25491	GO:0051082
d1nlta3	A	P25491	GO:0006457
d1nlta3	A	P25491	GO:0030544
d1nlta3	A	P25491	GO:0031072
d1nlta3	A	P25491	GO:0051082

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G	V	T	K	E	I	R	I	P	T	L	E	E	C	D	V	C	H	G	S	G	A	K	P	G	T	Q	P	Q	T	C	P	T	C	H	G	S	G	Q	V	Q	M	R	Q	-	-	G	F	-	F	A	V	Q	Q	T	-	C	P	H	C	Q	G	R	G	T	L	I	K	-	-	D	P	C	N	K	C	H	G	H	G	R	V	E	R	S
-	-	-	-	-	-	-	-	-	K	Q	I	L	C	K	E	C	E	G	R	G	G	K	K	G	-	A	V	K	K	C	T	S	C	N	G	Q	G	I	K	F	V	T	R	Q	M	G	P	M	I	Q	R	F	Q	T	E	C	D	V	C	H	G	T	G	D	I	I	D	P	K	D	R	C	K	S	C	N	G	K	K	V	E	N	E	-

									10										20										30										40										50										60										70										80
G	V	T	K	E	I	R	I	P	T	L	E	E	C	D	V	C	H	G	S	G	A	K	P	G	T	Q	P	Q	T	C	P	T	C	H	G	S	G	Q	V	Q	M	R	Q	-	-	G	F	-	F	A	V	Q	Q	T	-	C	P	H	C	Q	G	R	G	T	L	I	K	-	-	D	P	C	N	K	C	H	G	H	G	R	V	E	R	S
-	-	-	-	-	-	-	-	-	K	Q	I	L	C	K	E	C	E	G	R	G	G	K	K	G	-	A	V	K	K	C	T	S	C	N	G	Q	G	I	K	F	V	T	R	Q	M	G	P	M	I	Q	R	F	Q	T	E	C	D	V	C	H	G	T	G	D	I	I	D	P	K	D	R	C	K	S	C	N	G	K	K	V	E	N	E	-

									10										20										30										40										50										60										70										80
G	V	T	K	E	I	R	I	P	T	L	E	E	C	D	V	C	H	G	S	G	A	K	P	G	T	Q	P	Q	T	C	P	T	C	H	G	S	G	Q	V	Q	M	R	Q	-	-	G	F	-	F	A	V	Q	Q	T	-	C	P	H	C	Q	G	R	G	T	L	I	K	-	-	D	P	C	N	K	C	H	G	H	G	R	V	E	R	S
-	-	-	-	-	-	-	-	-	K	Q	I	L	C	K	E	C	E	G	R	G	G	K	K	G	-	A	V	K	K	C	T	S	C	N	G	Q	G	I	K	F	V	T	R	Q	M	G	P	M	I	Q	R	F	Q	T	E	C	D	V	C	H	G	T	G	D	I	I	D	P	K	D	R	C	K	S	C	N	G	K	K	V	E	N	E	-