PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1u5ka2  (  81 )    ptlaeperyafahLMaeFadaLFqgefseqAfdlfaaSlrgVahqpdPeW
d2b0oe1  ( 423 )                                                  dltk
                                                                   aaa

                             60        70        80        90        100 
d1u5ka2  ( 132 )    VALVMSykLLglAgVipqtarCarcgapdPehpDplgGqLlcskCAa---
d2b0oe1  ( 427 )    lliaeVksr-------pgNsqCCDCgaadPtwLStnlGVLTciqCSgVHr
                    aaaaaaa                        bb      bb         

                             110       120       130       140       150 
d1u5ka2  ( 179 )    -------lppyp------paVldFLrh--AvrrtvraSfe----------
d2b0oe1  ( 470 )    eLgvrfSrMqSLtldlLgpseLllAlnmGNtsfnevmeaqlpshggpkPs
                                      aaaaaaaaa       aaa             

                             160       170       180  
d1u5ka2  ( 204 )    qpVpsadrpaLWraLekfVtvqvggvHsWrqlVp
d2b0oe1  ( 520 )    aesdmgtRrdYImAKYvehrfarr---------c
                           aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1u5ka2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1u5ka2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Recombinational repair protein RecO, C-terminal domain	RecO C-terminal domain-like	Deinococcus radiodurans [TaxId: 1299]		view
d2b0oe1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2b0oe1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1u5ka2	A	Q9RW50	GO:0006281
d1u5ka2	A	Q9RW50	GO:0006302
d1u5ka2	A	Q9RW50	GO:0006310
d1u5ka2	A	Q9RW50	GO:0043590
d1u5ka2	A	Q9RW50	GO:0046872
d1u5ka2	A	Q9RW50	GO:0006281
d1u5ka2	A	Q9RW50	GO:0006302
d1u5ka2	A	Q9RW50	GO:0006310
d1u5ka2	A	Q9RW50	GO:0043590
d1u5ka2	A	Q9RW50	GO:0046872

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