PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d1frea-  (   4 )               ekCsehderlklyckdd--gtlscviCrdslkHashnFl
d2csva1  (   8 )    qllepirdfearkCpvhg-ktmelfCqtdq-tciCylCmfq-ehknhstv
d2d8va1  (   8 )              lpwCcicne-dAtlrCagcdgdlycarcfre-ghdnf---
d2dida1  (   8 )              eslCpqhh-ealslfCyedq-eavClicaishtHrahtvv
d2djaa1  (   8 )    vepvpdthlrgitCldhenekvnmyCvsdd-qliCalCklvgrhrdhqva
d3ddta1  (   1 )            gshpmckehedekiniyCltce-vptCsmckvfgiHkaceva
d5k3qa-  (  94 )              vdhcarhg-eklllfCqeds-kvICwlCers-eHg--hTf
                                           bbb      bb aaaa           

                             60        70  
d1frea-  (  41 )    pi                    
d2csva1  (  55 )    tveeakaeket----------e
d2d8va1  (  43 )    ---dlkehqtspyhprrpcqeh
d2dida1  (  46 )    pl                    
d2djaa1  (  57 )    slndrfeklkqtlemnltnlvk
d3ddta1  (  42 )    plqs                  
d5k3qa-  ( 132 )    lmev

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1frea- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1frea- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Nuclear factor XNF7	B-box zinc-binding domain	African clawed frog (Xenopus laevis) [TaxId: 8355]	view
d2csva1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2csva1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tripartite motif-containing protein 29	B-box zinc-binding domain	Human (Homo sapiens) [TaxId: 9606]	view
d2d8va1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2d8va1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Zinc finger FYVE domain-containing protein 19	B-box zinc-binding domain	Mouse (Mus musculus) [TaxId: 10090]	view
d2dida1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2dida1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tripartite motif-containing protein 39	B-box zinc-binding domain	Human (Homo sapiens) [TaxId: 9606]	view
d2djaa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2djaa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Midline-2	B-box zinc-binding domain	Human (Homo sapiens) [TaxId: 9606]	view
d3ddta1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ddta1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	B-box zinc-binding domain	Human (Homo sapiens) [TaxId: 9606]	view
d5k3qa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5k3qa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Rhesus monkey (Macaca mulatta) [TaxId: 9544]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Q	L	L	E	P	I	R	D	F	E	A	R	K	C	P	V	H	G	-	K	T	M	E	L	F	C	Q	T	D	Q	-	T	C	I	C	Y	L	C	M	F	Q	-	E	H	K	N	H	S	T	V	T	V	E	E	A	K	A	E	K	E	T	-	-	-	-	-	-	-	-	-	-	E
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Member	Chain	UniProtKB	GO term
d1frea_	A	Q92021	GO:0008270
d2csva1	A	Q14134	GO:0008270
d2dida1	A	Q9HCM9	GO:0008270
d2djaa1	A	Q9UJV3	GO:0008270

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Q	L	L	E	P	I	R	D	F	E	A	R	K	C	P	V	H	G	-	K	T	M	E	L	F	C	Q	T	D	Q	-	T	C	I	C	Y	L	C	M	F	Q	-	E	H	K	N	H	S	T	V	T	V	E	E	A	K	A	E	K	E	T	-	-	-	-	-	-	-	-	-	-	E
-	-	-	-	-	-	-	-	-	-	L	P	W	C	C	I	C	N	E	-	D	A	T	L	R	C	A	G	C	D	G	D	L	Y	C	A	R	C	F	R	E	-	G	H	D	N	F	-	-	-	-	-	-	D	L	K	E	H	Q	T	S	P	Y	H	P	R	R	P	C	Q	E	H
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V	E	P	V	P	D	T	H	L	R	G	I	T	C	L	D	H	E	N	E	K	V	N	M	Y	C	V	S	D	D	-	Q	L	I	C	A	L	C	K	L	V	G	R	H	R	D	H	Q	V	A	S	L	N	D	R	F	E	K	L	K	Q	T	L	E	M	N	L	T	N	L	V	K
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Q	L	L	E	P	I	R	D	F	E	A	R	K	C	P	V	H	G	-	K	T	M	E	L	F	C	Q	T	D	Q	-	T	C	I	C	Y	L	C	M	F	Q	-	E	H	K	N	H	S	T	V	T	V	E	E	A	K	A	E	K	E	T	-	-	-	-	-	-	-	-	-	-	E
-	-	-	-	-	-	-	-	-	-	L	P	W	C	C	I	C	N	E	-	D	A	T	L	R	C	A	G	C	D	G	D	L	Y	C	A	R	C	F	R	E	-	G	H	D	N	F	-	-	-	-	-	-	D	L	K	E	H	Q	T	S	P	Y	H	P	R	R	P	C	Q	E	H
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V	E	P	V	P	D	T	H	L	R	G	I	T	C	L	D	H	E	N	E	K	V	N	M	Y	C	V	S	D	D	-	Q	L	I	C	A	L	C	K	L	V	G	R	H	R	D	H	Q	V	A	S	L	N	D	R	F	E	K	L	K	Q	T	L	E	M	N	L	T	N	L	V	K
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Q	L	L	E	P	I	R	D	F	E	A	R	K	C	P	V	H	G	-	K	T	M	E	L	F	C	Q	T	D	Q	-	T	C	I	C	Y	L	C	M	F	Q	-	E	H	K	N	H	S	T	V	T	V	E	E	A	K	A	E	K	E	T	-	-	-	-	-	-	-	-	-	-	E
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V	E	P	V	P	D	T	H	L	R	G	I	T	C	L	D	H	E	N	E	K	V	N	M	Y	C	V	S	D	D	-	Q	L	I	C	A	L	C	K	L	V	G	R	H	R	D	H	Q	V	A	S	L	N	D	R	F	E	K	L	K	Q	T	L	E	M	N	L	T	N	L	V	K
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-	-	-	-	-	-	-	-	-	-	V	D	H	C	A	R	H	G	-	E	K	L	L	L	F	C	Q	E	D	S	-	K	V	I	C	W	L	C	E	R	S	-	E	H	G	-	-	H	T	F	L	M	E	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-