PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2ywwa2  ( 100 )    deiegtLkCtnpnCitnkekvrgkFkiesk-nplkIrCyycekfLn--ev
d4fywb2  ( 101 )    eridnvlvCpnsnCishaepvssSFavrkrandiALkCkycekefshnvV
                     bbb                   bbbbbb     bbbb            

                       
d2ywwa2  ( 147 )    if 
d4fywb2  ( 151 )    lan

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2ywwa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ywwa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Methanocaldococcus jannaschii [TaxId: 2190]		view
d4fywb2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4fywb2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50
D	E	I	E	G	T	L	K	C	T	N	P	N	C	I	T	N	K	E	K	V	R	G	K	F	K	I	E	S	K	-	N	P	L	K	I	R	C	Y	Y	C	E	K	F	L	N	-	-	E	V	I	F	-
E	R	I	D	N	V	L	V	C	P	N	S	N	C	I	S	H	A	E	P	V	S	S	S	F	A	V	R	K	R	A	N	D	I	A	L	K	C	K	Y	C	E	K	E	F	S	H	N	V	V	L	A	N

Member	Chain	UniProtKB	GO term

									10										20										30										40										50
D	E	I	E	G	T	L	K	C	T	N	P	N	C	I	T	N	K	E	K	V	R	G	K	F	K	I	E	S	K	-	N	P	L	K	I	R	C	Y	Y	C	E	K	F	L	N	-	-	E	V	I	F	-
E	R	I	D	N	V	L	V	C	P	N	S	N	C	I	S	H	A	E	P	V	S	S	S	F	A	V	R	K	R	A	N	D	I	A	L	K	C	K	Y	C	E	K	E	F	S	H	N	V	V	L	A	N

									10										20										30										40										50
D	E	I	E	G	T	L	K	C	T	N	P	N	C	I	T	N	K	E	K	V	R	G	K	F	K	I	E	S	K	-	N	P	L	K	I	R	C	Y	Y	C	E	K	F	L	N	-	-	E	V	I	F	-
E	R	I	D	N	V	L	V	C	P	N	S	N	C	I	S	H	A	E	P	V	S	S	S	F	A	V	R	K	R	A	N	D	I	A	L	K	C	K	Y	C	E	K	E	F	S	H	N	V	V	L	A	N

									10										20										30										40										50
D	E	I	E	G	T	L	K	C	T	N	P	N	C	I	T	N	K	E	K	V	R	G	K	F	K	I	E	S	K	-	N	P	L	K	I	R	C	Y	Y	C	E	K	F	L	N	-	-	E	V	I	F	-
E	R	I	D	N	V	L	V	C	P	N	S	N	C	I	S	H	A	E	P	V	S	S	S	F	A	V	R	K	R	A	N	D	I	A	L	K	C	K	Y	C	E	K	E	F	S	H	N	V	V	L	A	N