PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d1akya2  ( 131 )    grLiHpasgrsyhkifnpPkedmkDdvtgeaLvqrsdd
d1zaka2  ( 128 )    grrlDpvtgkiYhlkysppene----eiasrltqr   
d1zina2  ( 126 )    grriCrncgatYhlifhpPakpgvCdkcggeLyqr   
                     bbb      bbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1akya2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1akya2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Microbial and mitochondrial ADK, insert 'zinc finger' domain	Microbial and mitochondrial ADK, insert 'zinc finger' domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d1zaka2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zaka2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Microbial and mitochondrial ADK, insert 'zinc finger' domain	Microbial and mitochondrial ADK, insert 'zinc finger' domain	Maize (Zea mays) [TaxId: 4577]	view
d1zina2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zina2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Microbial and mitochondrial ADK, insert 'zinc finger' domain	Microbial and mitochondrial ADK, insert 'zinc finger' domain	Bacillus stearothermophilus [TaxId: 1422]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	R	L	I	H	P	A	S	G	R	S	Y	H	K	I	F	N	P	P	K	E	D	M	K	D	D	V	T	G	E	A	L	V	Q	R	S	D	D
G	R	R	L	D	P	V	T	G	K	I	Y	H	L	K	Y	S	P	P	E	N	E	-	-	-	-	E	I	A	S	R	L	T	Q	R	-	-	-
G	R	R	I	C	R	N	C	G	A	T	Y	H	L	I	F	H	P	P	A	K	P	G	V	C	D	K	C	G	G	E	L	Y	Q	R	-	-	-

Member	Chain	UniProtKB	GO term
d1akya2	A	P07170	GO:0003688
d1akya2	A	P07170	GO:0004017
d1akya2	A	P07170	GO:0005524
d1akya2	A	P07170	GO:0005737
d1akya2	A	P07170	GO:0005739
d1akya2	A	P07170	GO:0005758
d1akya2	A	P07170	GO:0005829
d1akya2	A	P07170	GO:0006139
d1akya2	A	P07170	GO:0006172
d1akya2	A	P07170	GO:0006270
d1akya2	A	P07170	GO:0009117
d1akya2	A	P07170	GO:0016301
d1akya2	A	P07170	GO:0016310
d1akya2	A	P07170	GO:0016776
d1akya2	A	P07170	GO:0019205
d1akya2	A	P07170	GO:0036388
d1akya2	A	P07170	GO:0046033
d1akya2	A	P07170	GO:0046034
d1akya2	A	P07170	GO:0046940
d1zaka2	A	P43188	GO:0004017
d1zaka2	A	P43188	GO:0004127
d1zaka2	A	P43188	GO:0004550
d1zaka2	A	P43188	GO:0005524
d1zaka2	A	P43188	GO:0005737
d1zaka2	A	P43188	GO:0006139
d1zaka2	A	P43188	GO:0009507
d1zaka2	A	P43188	GO:0016301
d1zaka2	A	P43188	GO:0016310
d1zaka2	A	P43188	GO:0016776
d1zaka2	A	P43188	GO:0019205
d1zaka2	A	P43188	GO:0046940
d1zina2	A	P27142	GO:0004017
d1zina2	A	P27142	GO:0004550
d1zina2	A	P27142	GO:0005524
d1zina2	A	P27142	GO:0005737
d1zina2	A	P27142	GO:0005829
d1zina2	A	P27142	GO:0006139
d1zina2	A	P27142	GO:0008270
d1zina2	A	P27142	GO:0009123
d1zina2	A	P27142	GO:0009132
d1zina2	A	P27142	GO:0009165
d1zina2	A	P27142	GO:0016301
d1zina2	A	P27142	GO:0016310
d1zina2	A	P27142	GO:0016776
d1zina2	A	P27142	GO:0019205
d1zina2	A	P27142	GO:0044209
d1zina2	A	P27142	GO:0046872
d1zina2	A	P27142	GO:0046940
d1zina2	A	P27142	GO:0050145

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G	R	R	L	D	P	V	T	G	K	I	Y	H	L	K	Y	S	P	P	E	N	E	-	-	-	-	E	I	A	S	R	L	T	Q	R	-	-	-
G	R	R	I	C	R	N	C	G	A	T	Y	H	L	I	F	H	P	P	A	K	P	G	V	C	D	K	C	G	G	E	L	Y	Q	R	-	-	-

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G	R	L	I	H	P	A	S	G	R	S	Y	H	K	I	F	N	P	P	K	E	D	M	K	D	D	V	T	G	E	A	L	V	Q	R	S	D	D
G	R	R	L	D	P	V	T	G	K	I	Y	H	L	K	Y	S	P	P	E	N	E	-	-	-	-	E	I	A	S	R	L	T	Q	R	-	-	-
G	R	R	I	C	R	N	C	G	A	T	Y	H	L	I	F	H	P	P	A	K	P	G	V	C	D	K	C	G	G	E	L	Y	Q	R	-	-	-

									10										20										30
G	R	L	I	H	P	A	S	G	R	S	Y	H	K	I	F	N	P	P	K	E	D	M	K	D	D	V	T	G	E	A	L	V	Q	R	S	D	D
G	R	R	L	D	P	V	T	G	K	I	Y	H	L	K	Y	S	P	P	E	N	E	-	-	-	-	E	I	A	S	R	L	T	Q	R	-	-	-
G	R	R	I	C	R	N	C	G	A	T	Y	H	L	I	F	H	P	P	A	K	P	G	V	C	D	K	C	G	G	E	L	Y	Q	R	-	-	-