PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1hwtc1  (  59 )            riplsCtiCrkrkvkCdklr----------phCqqCtktgva
d1pyia1  (  30 )             srtaCkrCrlkkikCdqef----------psCkrCaklev-
d1zmec1  (  31 )              svaClsCrkrhikCpgg-----------npCqkCvtsna-
d2alca-  (  -1 )    gsmadtrrrqnhSCDpCrkgkrrCdApenrneanengwvsCsnCkrwn--
d3coqa1  (   8 )              eqaCdiCrlkklkCskek----------pkCakClknnw-
                                  aaaaaa                     aaaaa    

                             60      
d1hwtc1  (  91 )    hlChYme          
d1pyia1  (  60 )    -pcvsldpatg--kd  
d1zmec1  (  59 )    -iCeyleps        
d2alca-  (  47 )    kdCtFnwlSsqrsknss
d3coqa1  (  37 )    -eCryspk--t--krsp

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1hwtc1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hwtc1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hap1 (Cyp1)	Zn2/Cys6 DNA-binding domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d1pyia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1pyia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	PPR1	Zn2/Cys6 DNA-binding domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d1zmec1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zmec1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	PUT3	Zn2/Cys6 DNA-binding domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d2alca- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2alca- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ethanol regulon transcriptional activator ALCR DNA-binding domain	Zn2/Cys6 DNA-binding domain	Emericella nidulans, also known as Aspergillus nidulans [TaxId: 162425]	view
d3coqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3coqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Gal4	Zn2/Cys6 DNA-binding domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	S	M	A	D	T	R	R	R	Q	N	H	S	C	D	P	C	R	K	G	K	R	R	C	D	A	P	E	N	R	N	E	A	N	E	N	G	W	V	S	C	S	N	C	K	R	W	N	-	-	K	D	C	T	F	N	W	L	S	S	Q	R	S	K	N	S	S
-	-	-	-	-	-	-	-	-	-	E	Q	A	C	D	I	C	R	L	K	K	L	K	C	S	K	E	K	-	-	-	-	-	-	-	-	-	-	P	K	C	A	K	C	L	K	N	N	W	-	-	E	C	R	Y	S	P	K	-	-	T	-	-	K	R	S	P

Member	Chain	UniProtKB	GO term
d1hwtc1	C	P0CS82	GO:0000981
d1hwtc1	C	P0CS82	GO:0003700
d1hwtc1	C	P0CS82	GO:0006355
d1hwtc1	C	P0CS82	GO:0008270
d1pyia1	A	P07272	GO:0000981
d1pyia1	A	P07272	GO:0003700
d1pyia1	A	P07272	GO:0006355
d1pyia1	A	P07272	GO:0008270
d1zmec1	C	P25502	GO:0000981
d1zmec1	C	P25502	GO:0003700
d1zmec1	C	P25502	GO:0006355
d1zmec1	C	P25502	GO:0008270
d2alca_	A	P21228	GO:0000981
d2alca_	A	P21228	GO:0006355
d2alca_	A	P21228	GO:0008270
d3coqa1	A	P04386	GO:0000981
d3coqa1	A	P04386	GO:0003700
d3coqa1	A	P04386	GO:0006355
d3coqa1	A	P04386	GO:0008270

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G	S	M	A	D	T	R	R	R	Q	N	H	S	C	D	P	C	R	K	G	K	R	R	C	D	A	P	E	N	R	N	E	A	N	E	N	G	W	V	S	C	S	N	C	K	R	W	N	-	-	K	D	C	T	F	N	W	L	S	S	Q	R	S	K	N	S	S
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-	-	-	-	-	-	-	-	-	-	S	V	A	C	L	S	C	R	K	R	H	I	K	C	P	G	G	-	-	-	-	-	-	-	-	-	-	-	N	P	C	Q	K	C	V	T	S	N	A	-	-	I	C	E	Y	L	E	P	S	-	-	-	-	-	-	-	-
G	S	M	A	D	T	R	R	R	Q	N	H	S	C	D	P	C	R	K	G	K	R	R	C	D	A	P	E	N	R	N	E	A	N	E	N	G	W	V	S	C	S	N	C	K	R	W	N	-	-	K	D	C	T	F	N	W	L	S	S	Q	R	S	K	N	S	S
-	-	-	-	-	-	-	-	-	-	E	Q	A	C	D	I	C	R	L	K	K	L	K	C	S	K	E	K	-	-	-	-	-	-	-	-	-	-	P	K	C	A	K	C	L	K	N	N	W	-	-	E	C	R	Y	S	P	K	-	-	T	-	-	K	R	S	P

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-	-	-	-	-	-	-	-	-	S	R	T	A	C	K	R	C	R	L	K	K	I	K	C	D	Q	E	F	-	-	-	-	-	-	-	-	-	-	P	S	C	K	R	C	A	K	L	E	V	-	-	P	C	V	S	L	D	P	A	T	G	-	-	K	D	-	-
-	-	-	-	-	-	-	-	-	-	S	V	A	C	L	S	C	R	K	R	H	I	K	C	P	G	G	-	-	-	-	-	-	-	-	-	-	-	N	P	C	Q	K	C	V	T	S	N	A	-	-	I	C	E	Y	L	E	P	S	-	-	-	-	-	-	-	-
G	S	M	A	D	T	R	R	R	Q	N	H	S	C	D	P	C	R	K	G	K	R	R	C	D	A	P	E	N	R	N	E	A	N	E	N	G	W	V	S	C	S	N	C	K	R	W	N	-	-	K	D	C	T	F	N	W	L	S	S	Q	R	S	K	N	S	S
-	-	-	-	-	-	-	-	-	-	E	Q	A	C	D	I	C	R	L	K	K	L	K	C	S	K	E	K	-	-	-	-	-	-	-	-	-	-	P	K	C	A	K	C	L	K	N	N	W	-	-	E	C	R	Y	S	P	K	-	-	T	-	-	K	R	S	P