PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d1hlqa-  (   1 )         aap--lVaetdanAkslgYvadttkAdktkypkHt---kdqscst
d1hpia-  (   1 )            merLseddpaAqaleYrhdAssVq---hpaye---egqtcln
d1isua-  (   1 )                gtnaamrkafnyqdta-kn-------------gkkcsg
d2hipa-  (   1 )            eprAedg----hahdYvneaadas--ghprYq---egqlcen
d3h31a-  (   1 )    aeltÇtdvsgltaeeiqmReslqYtDhSpyp-------------dktcan
d5d8va-  (   1 )         aapanAvtaddptAialkYnqdAtkServaaarpglppeeqhcan
                                    aaaaa                          333

                             60        70        80        90  
d1hlqa-  (  41 )    calYqgk--tapqgacp--lFag-keVvakGWcsawakka 
d1hpia-  (  37 )    cllYtdasaq-dwGpcs--vFpg-klVsAnGWctawvar  
d1isua-  (  25 )    caqfvpgasptaaggck--vIpgDnqIapgGycdafivkk 
d2hipa-  (  34 )    cafwgeavq-dgwGrcthpdFde-vlVkaeGWcsvyapas 
d3h31a-  (  38 )    cqlYvpaespdqçGgcq--lIk--gpIhpnGyctswvqkat
d5d8va-  (  46 )    cqfmqanvgegdwkGcq--lFpg-klinvnGWcasWtlkag
                                  b

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1hlqa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hlqa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	HIPIP (high potential iron protein)	HIPIP (high potential iron protein)	Rhodoferax fermentans, a phototrophic bacterium [TaxId: 28066]	view
d1hpia- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hpia- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	HIPIP (high potential iron protein)	HIPIP (high potential iron protein)	Ectothiorhodospira vacuolata [TaxId: 1054]	view
d1isua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1isua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	HIPIP (high potential iron protein)	HIPIP (high potential iron protein)	Rhodocyclus tenuis [TaxId: 1066]	view
d2hipa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hipa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	HIPIP (high potential iron protein)	HIPIP (high potential iron protein)	Methylophilus methylotrophus, strain w3a1 [TaxId: 17]	view
d3h31a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3h31a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	HIPIP (high potential iron protein)	HIPIP (high potential iron protein)	Rhodothermus marinus [TaxId: 29549]	view
d5d8va- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5d8va- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	HIPIP (high potential iron protein)	HIPIP (high potential iron protein)	Thermochromatium tepidum [TaxId: 1050]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1hlqa_	A	P80882	GO:0009055
d1hlqa_	A	P80882	GO:0019646
d1hlqa_	A	P80882	GO:0046872
d1hlqa_	A	P80882	GO:0051539
d1hpia_	A	P38524	GO:0009055
d1hpia_	A	P38524	GO:0019646
d1hpia_	A	P38524	GO:0046872
d1hpia_	A	P38524	GO:0051539
d1isua_	A	P33678	GO:0009055
d1isua_	A	P33678	GO:0019646
d1isua_	A	P33678	GO:0046872
d1isua_	A	P33678	GO:0051539
d2hipa_	A	P04168	GO:0009055
d2hipa_	A	P04168	GO:0019646
d2hipa_	A	P04168	GO:0046872
d2hipa_	A	P04168	GO:0051539

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-	-	-	-	-	-	-	-	E	P	R	A	E	D	G	-	-	-	-	H	A	H	D	Y	V	N	E	A	A	D	A	S	-	-	G	H	P	R	Y	Q	-	-	-	E	G	Q	L	C	E	N	C	A	F	W	G	E	A	V	Q	-	D	G	W	G	R	C	T	H	P	D	F	D	E	-	V	L	V	K	A	E	G	W	C	S	V	Y	A	P	A	S	-
A	E	L	T	C	T	D	V	S	G	L	T	A	E	E	I	Q	M	R	E	S	L	Q	Y	T	D	H	S	P	Y	P	-	-	-	-	-	-	-	-	-	-	-	-	-	D	K	T	C	A	N	C	Q	L	Y	V	P	A	E	S	P	D	Q	C	G	G	C	Q	-	-	L	I	K	-	-	G	P	I	H	P	N	G	Y	C	T	S	W	V	Q	K	A	T
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A	E	L	T	C	T	D	V	S	G	L	T	A	E	E	I	Q	M	R	E	S	L	Q	Y	T	D	H	S	P	Y	P	-	-	-	-	-	-	-	-	-	-	-	-	-	D	K	T	C	A	N	C	Q	L	Y	V	P	A	E	S	P	D	Q	C	G	G	C	Q	-	-	L	I	K	-	-	G	P	I	H	P	N	G	Y	C	T	S	W	V	Q	K	A	T
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