PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40  
d1vzma-  (   3 )     keltlaqtsLrvÇtnmaÇdmadaqgivaAyqafygpipf
d2pf1a2  (  36 )          satdafwakytaÇesar-npreklneçlegn   
d6r2wl1  (   1 )    anafllrpgslrÇkqçsfArifkdartklfwisysdg--d
                                              aaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1vzma- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vzma- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Argyrosomus regius [TaxId: 172269]	view
d2pf1a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2pf1a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Prothrombin	GLA-domain	Cow (Bos taurus) [TaxId: 9913]	view
d6r2wl1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6r2wl1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Coagulation factor VIIa	GLA-domain	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40
-	K	E	L	T	L	A	Q	T	S	L	R	V	C	T	N	M	A	C	D	M	A	D	A	Q	G	I	V	A	A	Y	Q	A	F	Y	G	P	I	P	F
-	-	-	-	-	-	S	A	T	D	A	F	W	A	K	Y	T	A	C	E	S	A	R	-	N	P	R	E	K	L	N	E	C	L	E	G	N	-	-	-
A	N	A	F	L	L	R	P	G	S	L	R	C	K	Q	C	S	F	A	R	I	F	K	D	A	R	T	K	L	F	W	I	S	Y	S	D	G	-	-	D

Member	Chain	UniProtKB	GO term
d2pf1a2	A	P00735	GO:0005509
d2pf1a2	A	P00735	GO:0005576

									10										20										30										40
-	K	E	L	T	L	A	Q	T	S	L	R	V	C	T	N	M	A	C	D	M	A	D	A	Q	G	I	V	A	A	Y	Q	A	F	Y	G	P	I	P	F
-	-	-	-	-	-	S	A	T	D	A	F	W	A	K	Y	T	A	C	E	S	A	R	-	N	P	R	E	K	L	N	E	C	L	E	G	N	-	-	-
A	N	A	F	L	L	R	P	G	S	L	R	C	K	Q	C	S	F	A	R	I	F	K	D	A	R	T	K	L	F	W	I	S	Y	S	D	G	-	-	D

									10										20										30										40
-	K	E	L	T	L	A	Q	T	S	L	R	V	C	T	N	M	A	C	D	M	A	D	A	Q	G	I	V	A	A	Y	Q	A	F	Y	G	P	I	P	F
-	-	-	-	-	-	S	A	T	D	A	F	W	A	K	Y	T	A	C	E	S	A	R	-	N	P	R	E	K	L	N	E	C	L	E	G	N	-	-	-
A	N	A	F	L	L	R	P	G	S	L	R	C	K	Q	C	S	F	A	R	I	F	K	D	A	R	T	K	L	F	W	I	S	Y	S	D	G	-	-	D

									10										20										30										40
-	K	E	L	T	L	A	Q	T	S	L	R	V	C	T	N	M	A	C	D	M	A	D	A	Q	G	I	V	A	A	Y	Q	A	F	Y	G	P	I	P	F
-	-	-	-	-	-	S	A	T	D	A	F	W	A	K	Y	T	A	C	E	S	A	R	-	N	P	R	E	K	L	N	E	C	L	E	G	N	-	-	-
A	N	A	F	L	L	R	P	G	S	L	R	C	K	Q	C	S	F	A	R	I	F	K	D	A	R	T	K	L	F	W	I	S	Y	S	D	G	-	-	D