PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1dqca-  (   1 )    ylafrçgrySPÇlddgpnvnlySçÇSfYnÇhkçlArlenÇpkglhYnayl
d1iyca-  (   1 )                    elpklPddkvlir------srsnÇpkgkvwng--
                                                                 bb   

                             60        70  
d1dqca-  (  51 )    kvÇdwpskAgÇtSvnkeçhlwkt
d1iyca-  (  27 )    fdÇkspfafs             
                     bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1dqca- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1dqca- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tachycitin	Tachycitin	Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]		view
d1iyca- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1iyca- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Antifungal peptide scarabaecin	Antifungal peptide scarabaecin	Beetle (Oryctes rhinoceros) [TaxId: 72550]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
Y	L	A	F	R	C	G	R	Y	S	P	C	L	D	D	G	P	N	V	N	L	Y	S	C	C	S	F	Y	N	C	H	K	C	L	A	R	L	E	N	C	P	K	G	L	H	Y	N	A	Y	L	K	V	C	D	W	P	S	K	A	G	C	T	S	V	N	K	E	C	H	L	W	K	T
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	L	P	K	L	P	D	D	K	V	L	I	R	-	-	-	-	-	-	S	R	S	N	C	P	K	G	K	V	W	N	G	-	-	F	D	C	K	S	P	F	A	F	S	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1dqca_	A	P91818	GO:0005576
d1dqca_	A	P91818	GO:0008061
d1iyca_	A	Q86SC0	GO:0005576
d1iyca_	A	Q86SC0	GO:0008061
d1iyca_	A	Q86SC0	GO:0031640
d1iyca_	A	Q86SC0	GO:0042742
d1iyca_	A	Q86SC0	GO:0050829
d1iyca_	A	Q86SC0	GO:0050832

									10										20										30										40										50										60										70
Y	L	A	F	R	C	G	R	Y	S	P	C	L	D	D	G	P	N	V	N	L	Y	S	C	C	S	F	Y	N	C	H	K	C	L	A	R	L	E	N	C	P	K	G	L	H	Y	N	A	Y	L	K	V	C	D	W	P	S	K	A	G	C	T	S	V	N	K	E	C	H	L	W	K	T
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	L	P	K	L	P	D	D	K	V	L	I	R	-	-	-	-	-	-	S	R	S	N	C	P	K	G	K	V	W	N	G	-	-	F	D	C	K	S	P	F	A	F	S	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70
Y	L	A	F	R	C	G	R	Y	S	P	C	L	D	D	G	P	N	V	N	L	Y	S	C	C	S	F	Y	N	C	H	K	C	L	A	R	L	E	N	C	P	K	G	L	H	Y	N	A	Y	L	K	V	C	D	W	P	S	K	A	G	C	T	S	V	N	K	E	C	H	L	W	K	T
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	L	P	K	L	P	D	D	K	V	L	I	R	-	-	-	-	-	-	S	R	S	N	C	P	K	G	K	V	W	N	G	-	-	F	D	C	K	S	P	F	A	F	S	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70
Y	L	A	F	R	C	G	R	Y	S	P	C	L	D	D	G	P	N	V	N	L	Y	S	C	C	S	F	Y	N	C	H	K	C	L	A	R	L	E	N	C	P	K	G	L	H	Y	N	A	Y	L	K	V	C	D	W	P	S	K	A	G	C	T	S	V	N	K	E	C	H	L	W	K	T
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	L	P	K	L	P	D	D	K	V	L	I	R	-	-	-	-	-	-	S	R	S	N	C	P	K	G	K	V	W	N	G	-	-	F	D	C	K	S	P	F	A	F	S	-	-	-	-	-	-	-	-	-	-	-	-	-