PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1e88a3  (   1 )     yg-hçvtd-sgvvysvgmqwlktqg--nkqmlÇtÇlg--n-gvsçqet 
d1o9aa1  (  17 )    skp-gÇydn--gkhyqinqqwertyl--gnalvÇtÇyGgsr-gfnçeskp
d1tpga2  (   1 )    syqviçrdektqmiyqqhqswlrpvlrsnrveyÇwÇns---graqçhsvp
d1u5ma1  (   5 )    qeagsÇvqd--gqryndkdvwkpe-----pçriçvÇdtG---tvlçddii
d2cg7a2  (  62 )    a-eetÇfDkytgntyrvgdtyerpkds--miwdÇtÇiGagrgrisçtian
                         bb      bb    bbbbb      bbbbb         bbb   

                             60        70        
d1e88a3                                          
d1o9aa1                                          
d1tpga2  (  48 )    vks                          
d1u5ma1  (  45 )    Çedvkdçlspeipfgeççpiçpadlaaaa
d2cg7a2

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1e88a3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1e88a3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Fibronectin	Fibronectin type I module	Human (Homo sapiens) [TaxId: 9606]	view
d1o9aa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1o9aa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Fibronectin	Fibronectin type I module	Human (Homo sapiens) [TaxId: 9606]	view
d1tpga2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1tpga2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tissue-type plasminogen activator, t-PA	Fibronectin type I module	Human (Homo sapiens) [TaxId: 9606]	view
d1u5ma1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1u5ma1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Collagen alpha 1(II) chain precursor	VWC domain	Human (Homo sapiens) [TaxId: 9606]	view
d2cg7a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2cg7a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Fibronectin	Fibronectin type I module	Human (Homo sapiens) [TaxId: 9606]	view

Domain ID	Name
d2cg7a1	2cg7 A:109-151

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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S	K	P	-	G	C	Y	D	N	-	-	G	K	H	Y	Q	I	N	Q	Q	W	E	R	T	Y	L	-	-	G	N	A	L	V	C	T	C	Y	G	G	S	R	-	G	F	N	C	E	S	K	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
S	Y	Q	V	I	C	R	D	E	K	T	Q	M	I	Y	Q	Q	H	Q	S	W	L	R	P	V	L	R	S	N	R	V	E	Y	C	W	C	N	S	-	-	-	G	R	A	Q	C	H	S	V	P	V	K	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Q	E	A	G	S	C	V	Q	D	-	-	G	Q	R	Y	N	D	K	D	V	W	K	P	E	-	-	-	-	-	P	C	R	I	C	V	C	D	T	G	-	-	-	T	V	L	C	D	D	I	I	C	E	D	V	K	D	C	L	S	P	E	I	P	F	G	E	C	C	P	I	C	P	A	D	L	A	A	A	A
A	-	E	E	T	C	F	D	K	Y	T	G	N	T	Y	R	V	G	D	T	Y	E	R	P	K	D	S	-	-	M	I	W	D	C	T	C	I	G	A	G	R	G	R	I	S	C	T	I	A	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1e88a3	A	P02751	GO:0005576
d1o9aa1	A	P02751	GO:0005576
d1o9aa1	A	Q53971	GO:0005576
d1tpga2	A	P00750	GO:0005576
d2cg7a2	A	P02751	GO:0005576

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S	K	P	-	G	C	Y	D	N	-	-	G	K	H	Y	Q	I	N	Q	Q	W	E	R	T	Y	L	-	-	G	N	A	L	V	C	T	C	Y	G	G	S	R	-	G	F	N	C	E	S	K	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
S	Y	Q	V	I	C	R	D	E	K	T	Q	M	I	Y	Q	Q	H	Q	S	W	L	R	P	V	L	R	S	N	R	V	E	Y	C	W	C	N	S	-	-	-	G	R	A	Q	C	H	S	V	P	V	K	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Q	E	A	G	S	C	V	Q	D	-	-	G	Q	R	Y	N	D	K	D	V	W	K	P	E	-	-	-	-	-	P	C	R	I	C	V	C	D	T	G	-	-	-	T	V	L	C	D	D	I	I	C	E	D	V	K	D	C	L	S	P	E	I	P	F	G	E	C	C	P	I	C	P	A	D	L	A	A	A	A
A	-	E	E	T	C	F	D	K	Y	T	G	N	T	Y	R	V	G	D	T	Y	E	R	P	K	D	S	-	-	M	I	W	D	C	T	C	I	G	A	G	R	G	R	I	S	C	T	I	A	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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S	K	P	-	G	C	Y	D	N	-	-	G	K	H	Y	Q	I	N	Q	Q	W	E	R	T	Y	L	-	-	G	N	A	L	V	C	T	C	Y	G	G	S	R	-	G	F	N	C	E	S	K	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
S	Y	Q	V	I	C	R	D	E	K	T	Q	M	I	Y	Q	Q	H	Q	S	W	L	R	P	V	L	R	S	N	R	V	E	Y	C	W	C	N	S	-	-	-	G	R	A	Q	C	H	S	V	P	V	K	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Q	E	A	G	S	C	V	Q	D	-	-	G	Q	R	Y	N	D	K	D	V	W	K	P	E	-	-	-	-	-	P	C	R	I	C	V	C	D	T	G	-	-	-	T	V	L	C	D	D	I	I	C	E	D	V	K	D	C	L	S	P	E	I	P	F	G	E	C	C	P	I	C	P	A	D	L	A	A	A	A
A	-	E	E	T	C	F	D	K	Y	T	G	N	T	Y	R	V	G	D	T	Y	E	R	P	K	D	S	-	-	M	I	W	D	C	T	C	I	G	A	G	R	G	R	I	S	C	T	I	A	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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S	K	P	-	G	C	Y	D	N	-	-	G	K	H	Y	Q	I	N	Q	Q	W	E	R	T	Y	L	-	-	G	N	A	L	V	C	T	C	Y	G	G	S	R	-	G	F	N	C	E	S	K	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
S	Y	Q	V	I	C	R	D	E	K	T	Q	M	I	Y	Q	Q	H	Q	S	W	L	R	P	V	L	R	S	N	R	V	E	Y	C	W	C	N	S	-	-	-	G	R	A	Q	C	H	S	V	P	V	K	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Q	E	A	G	S	C	V	Q	D	-	-	G	Q	R	Y	N	D	K	D	V	W	K	P	E	-	-	-	-	-	P	C	R	I	C	V	C	D	T	G	-	-	-	T	V	L	C	D	D	I	I	C	E	D	V	K	D	C	L	S	P	E	I	P	F	G	E	C	C	P	I	C	P	A	D	L	A	A	A	A
A	-	E	E	T	C	F	D	K	Y	T	G	N	T	Y	R	V	G	D	T	Y	E	R	P	K	D	S	-	-	M	I	W	D	C	T	C	I	G	A	G	R	G	R	I	S	C	T	I	A	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-