PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2pspa2  (  54 )       eseeçvmqvsaRknÇGypgIspedÇaarnÇÇfsdtipevpwÇFfpms
d6v1ca-  (   4 )    vglsanqçavpa-dRvdçGyphvtp-eÇnnrgçÇfdsripgvpwÇFplqe
                         333                         bb         bb    

                          
d2pspa2  ( 101 )    vedchy
d6v1ca-  (  55 )    -----a

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2pspa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2pspa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pancreatic spasmolytic polypeptide	Trefoil	Pig (Sus scrofa) [TaxId: 9823]		view
d6v1ca- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6v1ca- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Trefoil	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	E	S	E	E	C	V	M	Q	V	S	A	R	K	N	C	G	Y	P	G	I	S	P	E	D	C	A	A	R	N	C	C	F	S	D	T	I	P	E	V	P	W	C	F	F	P	M	S	V	E	D	C	H	Y
V	G	L	S	A	N	Q	C	A	V	P	A	-	D	R	V	D	C	G	Y	P	H	V	T	P	-	E	C	N	N	R	G	C	C	F	D	S	R	I	P	G	V	P	W	C	F	P	L	Q	E	-	-	-	-	-	A

Member	Chain	UniProtKB	GO term
d2pspa2	A	P01359	GO:0005576
d2pspa2	A	P01359	GO:0005615
d2pspa2	A	P01359	GO:0008083
d2pspa2	A	P01359	GO:0030277
d2pspa2	A	P01359	GO:0031723
d2pspa2	A	P01359	GO:0060455
d2pspa2	A	P01359	GO:0070098

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-	-	-	E	S	E	E	C	V	M	Q	V	S	A	R	K	N	C	G	Y	P	G	I	S	P	E	D	C	A	A	R	N	C	C	F	S	D	T	I	P	E	V	P	W	C	F	F	P	M	S	V	E	D	C	H	Y
V	G	L	S	A	N	Q	C	A	V	P	A	-	D	R	V	D	C	G	Y	P	H	V	T	P	-	E	C	N	N	R	G	C	C	F	D	S	R	I	P	G	V	P	W	C	F	P	L	Q	E	-	-	-	-	-	A

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-	-	-	E	S	E	E	C	V	M	Q	V	S	A	R	K	N	C	G	Y	P	G	I	S	P	E	D	C	A	A	R	N	C	C	F	S	D	T	I	P	E	V	P	W	C	F	F	P	M	S	V	E	D	C	H	Y
V	G	L	S	A	N	Q	C	A	V	P	A	-	D	R	V	D	C	G	Y	P	H	V	T	P	-	E	C	N	N	R	G	C	C	F	D	S	R	I	P	G	V	P	W	C	F	P	L	Q	E	-	-	-	-	-	A

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-	-	-	E	S	E	E	C	V	M	Q	V	S	A	R	K	N	C	G	Y	P	G	I	S	P	E	D	C	A	A	R	N	C	C	F	S	D	T	I	P	E	V	P	W	C	F	F	P	M	S	V	E	D	C	H	Y
V	G	L	S	A	N	Q	C	A	V	P	A	-	D	R	V	D	C	G	Y	P	H	V	T	P	-	E	C	N	N	R	G	C	C	F	D	S	R	I	P	G	V	P	W	C	F	P	L	Q	E	-	-	-	-	-	A