PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1h8pa1  (  22 )                eeÇvfpFvyrn---------------------------
d1l6ja3  ( 216 )    vvvpTrfGnAdgaaÇhfpFifeg---------------------------
d2fd6a2  (  50 )        çYegnGhfyrgkastDtmgrpÇlpWnsatVlqq----tyhAhrsda
d2k4ra-  (   1 )         rÇgagepwg---natnlgvpÇlhWdevpp-----flersppas-w
d3k65a-  ( 170 )        çvpdrGqqyqgrlavTthglpÇlaWasaqAkalskhqdfn------
d6dcma-  (  -3 )    fseeçMhgsGenYdGkis-TmsgleÇQaWdsqsphaH----gyipsk--f
d6szwd-  (  19 )     vvlTv----tgepÇhfpFqYhr---------------------------
                                                                      

                             60        70        80        90   
d1h8pa1  (  33 )    -----rkhfdÇtvhgsl--fpWÇSldadyv--grwkyÇaqrDya
d1l6ja3  ( 239 )    -----rsysaçttdgrsdglpWÇSTtanydtddrfGfÇpse   
d2fd6a2  (  92 )    lqlgLgkhnyÇRNPdnrr-rPWÇYVq-vg-lkplvqeÇmvhdça
d2k4ra-  (  37 )    aelrGqphnfÇrSpdg-agrpWÇFyr-naqgkvdwGyÇdçgq-g
d3k65a-  ( 210 )    savqlve-nfÇRNPdgdeeGVWÇYva-gp-g--dfgyÇdlnyç 
d6dcma-  (  41 )    pnknLkk-nyÇRNPdndpqGPWÇFTt-dp-nk-rweyÇdIprça
d6szwd-  (  37 )    -----qlyhkçthkgrpGpqpWÇATtpnfdqdqrwgyÇl     
                                         bbb          bbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1h8pa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1h8pa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	PDC-109, collagen-binding type II domain	Fibronectin type II module	Cow (Bos taurus) [TaxId: 9913]	view
d1l6ja3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1l6ja3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Gelatinase B (MMP-9) type II modules	Fibronectin type II module	Human (Homo sapiens) [TaxId: 9606]	view
d2fd6a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2fd6a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Kringle modules	Human (Homo sapiens) [TaxId: 9606]	view
d2k4ra- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2k4ra- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Norway rat (Rattus norvegicus) [TaxId: 10116]	view
d3k65a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3k65a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Kringle modules	Human (Homo sapiens) [TaxId: 9606]	view
d6dcma- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6dcma- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d6szwd- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6szwd- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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F	S	E	E	C	M	H	G	S	G	E	N	Y	D	G	K	I	S	-	T	M	S	G	L	E	C	Q	A	W	D	S	Q	S	P	H	A	H	-	-	-	-	G	Y	I	P	S	K	-	-	F	P	N	K	N	L	K	K	-	N	Y	C	R	N	P	D	N	D	P	Q	G	P	W	C	F	T	T	-	D	P	-	N	K	-	R	W	E	Y	C	D	I	P	R	C	A
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Member	Chain	UniProtKB	GO term
d1h8pa1	A	P02784	GO:0005576
d1h8pa1	A	P02784	GO:0005615
d1h8pa1	A	P02784	GO:0007338
d1h8pa1	A	P02784	GO:0008201
d1h8pa1	A	P02784	GO:0009986
d1h8pa1	A	P02784	GO:0033700
d1h8pa1	A	P02784	GO:0048240
d1h8pa1	A	P02784	GO:1902492
d1l6ja3	A	P14780	GO:0004222
d1l6ja3	A	P14780	GO:0006508
d1l6ja3	A	P14780	GO:0008237
d1l6ja3	A	P14780	GO:0008270
d1l6ja3	A	P14780	GO:0031012
d1l6ja3	A	P14780	GO:0004222
d1l6ja3	A	P14780	GO:0006508
d1l6ja3	A	P14780	GO:0008237
d1l6ja3	A	P14780	GO:0008270
d1l6ja3	A	P14780	GO:0031012

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V	V	V	P	T	R	F	G	N	A	D	G	A	A	C	H	F	P	F	I	F	E	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	S	Y	S	A	C	T	T	D	G	R	S	D	G	L	P	W	C	S	T	T	A	N	Y	D	T	D	D	R	F	G	F	C	P	S	E	-	-	-
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F	S	E	E	C	M	H	G	S	G	E	N	Y	D	G	K	I	S	-	T	M	S	G	L	E	C	Q	A	W	D	S	Q	S	P	H	A	H	-	-	-	-	G	Y	I	P	S	K	-	-	F	P	N	K	N	L	K	K	-	N	Y	C	R	N	P	D	N	D	P	Q	G	P	W	C	F	T	T	-	D	P	-	N	K	-	R	W	E	Y	C	D	I	P	R	C	A
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V	V	V	P	T	R	F	G	N	A	D	G	A	A	C	H	F	P	F	I	F	E	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	S	Y	S	A	C	T	T	D	G	R	S	D	G	L	P	W	C	S	T	T	A	N	Y	D	T	D	D	R	F	G	F	C	P	S	E	-	-	-
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-	-	-	-	C	V	P	D	R	G	Q	Q	Y	Q	G	R	L	A	V	T	T	H	G	L	P	C	L	A	W	A	S	A	Q	A	K	A	L	S	K	H	Q	D	F	N	-	-	-	-	-	-	S	A	V	Q	L	V	E	-	N	F	C	R	N	P	D	G	D	E	E	G	V	W	C	Y	V	A	-	G	P	-	G	-	-	D	F	G	Y	C	D	L	N	Y	C	-
F	S	E	E	C	M	H	G	S	G	E	N	Y	D	G	K	I	S	-	T	M	S	G	L	E	C	Q	A	W	D	S	Q	S	P	H	A	H	-	-	-	-	G	Y	I	P	S	K	-	-	F	P	N	K	N	L	K	K	-	N	Y	C	R	N	P	D	N	D	P	Q	G	P	W	C	F	T	T	-	D	P	-	N	K	-	R	W	E	Y	C	D	I	P	R	C	A
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V	V	V	P	T	R	F	G	N	A	D	G	A	A	C	H	F	P	F	I	F	E	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	S	Y	S	A	C	T	T	D	G	R	S	D	G	L	P	W	C	S	T	T	A	N	Y	D	T	D	D	R	F	G	F	C	P	S	E	-	-	-
-	-	-	-	C	Y	E	G	N	G	H	F	Y	R	G	K	A	S	T	D	T	M	G	R	P	C	L	P	W	N	S	A	T	V	L	Q	Q	-	-	-	-	T	Y	H	A	H	R	S	D	A	L	Q	L	G	L	G	K	H	N	Y	C	R	N	P	D	N	R	R	-	R	P	W	C	Y	V	Q	-	V	G	-	L	K	P	L	V	Q	E	C	M	V	H	D	C	A
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