PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40     
d1bhpa-  (   1 )    ksÇÇkstlgrnçynlçra-rgaqklÇanvÇrÇkltsglsçpkdfpk
d3nira-  (   1 )    ttÇÇpsivArsnFnvçrlpgtpealÇatytgÇiiipgatçpgdyan
                     bb   aaaaaaaaaa      aaaaaaa   bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1bhpa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1bhpa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	beta-Purothionin	Crambin-like	Wheat (Triticum aestivum) [TaxId: 4565]		view
d3nira- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3nira- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Crambin-like	Crambe hispanica [TaxId: 3721]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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K	S	C	C	K	S	T	L	G	R	N	C	Y	N	L	C	R	A	-	R	G	A	Q	K	L	C	A	N	V	C	R	C	K	L	T	S	G	L	S	C	P	K	D	F	P	K
T	T	C	C	P	S	I	V	A	R	S	N	F	N	V	C	R	L	P	G	T	P	E	A	L	C	A	T	Y	T	G	C	I	I	I	P	G	A	T	C	P	G	D	Y	A	N

Member	Chain	UniProtKB	GO term
d1bhpa_	A	P01543	GO:0006952
d1bhpa_	A	P01543	GO:0006952

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K	S	C	C	K	S	T	L	G	R	N	C	Y	N	L	C	R	A	-	R	G	A	Q	K	L	C	A	N	V	C	R	C	K	L	T	S	G	L	S	C	P	K	D	F	P	K
T	T	C	C	P	S	I	V	A	R	S	N	F	N	V	C	R	L	P	G	T	P	E	A	L	C	A	T	Y	T	G	C	I	I	I	P	G	A	T	C	P	G	D	Y	A	N

									10										20										30										40
K	S	C	C	K	S	T	L	G	R	N	C	Y	N	L	C	R	A	-	R	G	A	Q	K	L	C	A	N	V	C	R	C	K	L	T	S	G	L	S	C	P	K	D	F	P	K
T	T	C	C	P	S	I	V	A	R	S	N	F	N	V	C	R	L	P	G	T	P	E	A	L	C	A	T	Y	T	G	C	I	I	I	P	G	A	T	C	P	G	D	Y	A	N

									10										20										30										40
K	S	C	C	K	S	T	L	G	R	N	C	Y	N	L	C	R	A	-	R	G	A	Q	K	L	C	A	N	V	C	R	C	K	L	T	S	G	L	S	C	P	K	D	F	P	K
T	T	C	C	P	S	I	V	A	R	S	N	F	N	V	C	R	L	P	G	T	P	E	A	L	C	A	T	Y	T	G	C	I	I	I	P	G	A	T	C	P	G	D	Y	A	N