PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1hkya1  (   9 )    vk----ltçyq--ngvsft---gGkaiseakaassqaÇqelÇekda----
d1i8na-  (  37 )    etitagndçWskrpgwkLp---dnl-LtkteftsvdeÇr-mÇeesa-vep
d3hmsa-  (  36 )      rntihe-FkksakttLikidpalkiktkkvntadqÇAnrÇtrnkgLpf
                                                      aaaa            

                             60        70        80        90      
d1hkya1  (  46 )    kçrfftlas--gkÇslFa----ddaalrptksdgAvSGnkrçilled
d1i8na-  (  83 )    sÇyILqIntetneÇyrNnegdVtwsslq-ydqpnvvQwhlha--çs 
d3hmsa-  (  83 )    tÇkAFVfdkarkqÇlWFpF-NsmssgVkkefghefDLyEN-kdyir 
                         bb                            bb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1hkya1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hkya1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pan module from microneme protein 5 (MIC-5)	Pan module (APPLE domain)	Eimeria tenella [TaxId: 5802]	view
d1i8na- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1i8na- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Anti-platelet protein	Anti-platelet protein	Mexican leech (Haementeria officinalis) [TaxId: 6410]	view
d3hmsa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3hmsa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hepatocyte growth factor	Hairpin loop containing domain	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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V	K	-	-	-	-	L	T	C	Y	Q	-	-	N	G	V	S	F	T	-	-	-	G	G	K	A	I	S	E	A	K	A	A	S	S	Q	A	C	Q	E	L	C	E	K	D	A	-	-	-	-	K	C	R	F	F	T	L	A	S	-	-	G	K	C	S	L	F	A	-	-	-	-	D	D	A	A	L	R	P	T	K	S	D	G	A	V	S	G	N	K	R	C	I	L	L	E	D
E	T	I	T	A	G	N	D	C	W	S	K	R	P	G	W	K	L	P	-	-	-	D	N	L	-	L	T	K	T	E	F	T	S	V	D	E	C	R	-	M	C	E	E	S	A	-	V	E	P	S	C	Y	I	L	Q	I	N	T	E	T	N	E	C	Y	R	N	N	E	G	D	V	T	W	S	S	L	Q	-	Y	D	Q	P	N	V	V	Q	W	H	L	H	A	-	-	C	S	-
-	-	R	N	T	I	H	E	-	F	K	K	S	A	K	T	T	L	I	K	I	D	P	A	L	K	I	K	T	K	K	V	N	T	A	D	Q	C	A	N	R	C	T	R	N	K	G	L	P	F	T	C	K	A	F	V	F	D	K	A	R	K	Q	C	L	W	F	P	F	-	N	S	M	S	S	G	V	K	K	E	F	G	H	E	F	D	L	Y	E	N	-	K	D	Y	I	R	-

Member	Chain	UniProtKB	GO term
d1i8na_	A	Q01747	GO:0005576
d1i8na_	A	Q01747	GO:0035821
d1i8na_	A	Q01747	GO:0090729

									10										20										30										40										50										60										70										80										90
V	K	-	-	-	-	L	T	C	Y	Q	-	-	N	G	V	S	F	T	-	-	-	G	G	K	A	I	S	E	A	K	A	A	S	S	Q	A	C	Q	E	L	C	E	K	D	A	-	-	-	-	K	C	R	F	F	T	L	A	S	-	-	G	K	C	S	L	F	A	-	-	-	-	D	D	A	A	L	R	P	T	K	S	D	G	A	V	S	G	N	K	R	C	I	L	L	E	D
E	T	I	T	A	G	N	D	C	W	S	K	R	P	G	W	K	L	P	-	-	-	D	N	L	-	L	T	K	T	E	F	T	S	V	D	E	C	R	-	M	C	E	E	S	A	-	V	E	P	S	C	Y	I	L	Q	I	N	T	E	T	N	E	C	Y	R	N	N	E	G	D	V	T	W	S	S	L	Q	-	Y	D	Q	P	N	V	V	Q	W	H	L	H	A	-	-	C	S	-
-	-	R	N	T	I	H	E	-	F	K	K	S	A	K	T	T	L	I	K	I	D	P	A	L	K	I	K	T	K	K	V	N	T	A	D	Q	C	A	N	R	C	T	R	N	K	G	L	P	F	T	C	K	A	F	V	F	D	K	A	R	K	Q	C	L	W	F	P	F	-	N	S	M	S	S	G	V	K	K	E	F	G	H	E	F	D	L	Y	E	N	-	K	D	Y	I	R	-

									10										20										30										40										50										60										70										80										90
V	K	-	-	-	-	L	T	C	Y	Q	-	-	N	G	V	S	F	T	-	-	-	G	G	K	A	I	S	E	A	K	A	A	S	S	Q	A	C	Q	E	L	C	E	K	D	A	-	-	-	-	K	C	R	F	F	T	L	A	S	-	-	G	K	C	S	L	F	A	-	-	-	-	D	D	A	A	L	R	P	T	K	S	D	G	A	V	S	G	N	K	R	C	I	L	L	E	D
E	T	I	T	A	G	N	D	C	W	S	K	R	P	G	W	K	L	P	-	-	-	D	N	L	-	L	T	K	T	E	F	T	S	V	D	E	C	R	-	M	C	E	E	S	A	-	V	E	P	S	C	Y	I	L	Q	I	N	T	E	T	N	E	C	Y	R	N	N	E	G	D	V	T	W	S	S	L	Q	-	Y	D	Q	P	N	V	V	Q	W	H	L	H	A	-	-	C	S	-
-	-	R	N	T	I	H	E	-	F	K	K	S	A	K	T	T	L	I	K	I	D	P	A	L	K	I	K	T	K	K	V	N	T	A	D	Q	C	A	N	R	C	T	R	N	K	G	L	P	F	T	C	K	A	F	V	F	D	K	A	R	K	Q	C	L	W	F	P	F	-	N	S	M	S	S	G	V	K	K	E	F	G	H	E	F	D	L	Y	E	N	-	K	D	Y	I	R	-

									10										20										30										40										50										60										70										80										90
V	K	-	-	-	-	L	T	C	Y	Q	-	-	N	G	V	S	F	T	-	-	-	G	G	K	A	I	S	E	A	K	A	A	S	S	Q	A	C	Q	E	L	C	E	K	D	A	-	-	-	-	K	C	R	F	F	T	L	A	S	-	-	G	K	C	S	L	F	A	-	-	-	-	D	D	A	A	L	R	P	T	K	S	D	G	A	V	S	G	N	K	R	C	I	L	L	E	D
E	T	I	T	A	G	N	D	C	W	S	K	R	P	G	W	K	L	P	-	-	-	D	N	L	-	L	T	K	T	E	F	T	S	V	D	E	C	R	-	M	C	E	E	S	A	-	V	E	P	S	C	Y	I	L	Q	I	N	T	E	T	N	E	C	Y	R	N	N	E	G	D	V	T	W	S	S	L	Q	-	Y	D	Q	P	N	V	V	Q	W	H	L	H	A	-	-	C	S	-
-	-	R	N	T	I	H	E	-	F	K	K	S	A	K	T	T	L	I	K	I	D	P	A	L	K	I	K	T	K	K	V	N	T	A	D	Q	C	A	N	R	C	T	R	N	K	G	L	P	F	T	C	K	A	F	V	F	D	K	A	R	K	Q	C	L	W	F	P	F	-	N	S	M	S	S	G	V	K	K	E	F	G	H	E	F	D	L	Y	E	N	-	K	D	Y	I	R	-