PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1mkca-  (  62 )                   çkykfenwgaçdggtgtkvrqgtlkkarynaqÇqe
d1mkna-  (   1 )    kkkdkvkkggpgseçaeWawgpçtpsskdçgvGFregtçg----------
                                      bb                bb            

                             60        
d1mkca-  (  97 )    --tirvtkpç         
d1mkna-  (  41 )    aqtqrirçrvpçnwkkefg

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1mkca- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1mkca- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Midkine, a heparin-binding growth factor, C-terminal domain	Midkine, a heparin-binding growth factor, C-terminal domain	Synthetic		view
d1mkna- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1mkna- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Midkine, a heparin-binding growth factor, N-terminal domain	Midkine, a heparin-binding growth factor, N-terminal domain	Synthetic		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	C	K	Y	K	F	E	N	W	G	A	C	D	G	G	T	G	T	K	V	R	Q	G	T	L	K	K	A	R	Y	N	A	Q	C	Q	E	-	-	T	I	R	V	T	K	P	C	-	-	-	-	-	-	-	-	-
K	K	K	D	K	V	K	K	G	G	P	G	S	E	C	A	E	W	A	W	G	P	C	T	P	S	S	K	D	C	G	V	G	F	R	E	G	T	C	G	-	-	-	-	-	-	-	-	-	-	A	Q	T	Q	R	I	R	C	R	V	P	C	N	W	K	K	E	F	G

Member	Chain	UniProtKB	GO term
d1mkca_	A	P21741	GO:0008083
d1mkna_	A	P21741	GO:0008083

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	C	K	Y	K	F	E	N	W	G	A	C	D	G	G	T	G	T	K	V	R	Q	G	T	L	K	K	A	R	Y	N	A	Q	C	Q	E	-	-	T	I	R	V	T	K	P	C	-	-	-	-	-	-	-	-	-
K	K	K	D	K	V	K	K	G	G	P	G	S	E	C	A	E	W	A	W	G	P	C	T	P	S	S	K	D	C	G	V	G	F	R	E	G	T	C	G	-	-	-	-	-	-	-	-	-	-	A	Q	T	Q	R	I	R	C	R	V	P	C	N	W	K	K	E	F	G

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	C	K	Y	K	F	E	N	W	G	A	C	D	G	G	T	G	T	K	V	R	Q	G	T	L	K	K	A	R	Y	N	A	Q	C	Q	E	-	-	T	I	R	V	T	K	P	C	-	-	-	-	-	-	-	-	-
K	K	K	D	K	V	K	K	G	G	P	G	S	E	C	A	E	W	A	W	G	P	C	T	P	S	S	K	D	C	G	V	G	F	R	E	G	T	C	G	-	-	-	-	-	-	-	-	-	-	A	Q	T	Q	R	I	R	C	R	V	P	C	N	W	K	K	E	F	G

									10										20										30										40										50										60
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	C	K	Y	K	F	E	N	W	G	A	C	D	G	G	T	G	T	K	V	R	Q	G	T	L	K	K	A	R	Y	N	A	Q	C	Q	E	-	-	T	I	R	V	T	K	P	C	-	-	-	-	-	-	-	-	-
K	K	K	D	K	V	K	K	G	G	P	G	S	E	C	A	E	W	A	W	G	P	C	T	P	S	S	K	D	C	G	V	G	F	R	E	G	T	C	G	-	-	-	-	-	-	-	-	-	-	A	Q	T	Q	R	I	R	C	R	V	P	C	N	W	K	K	E	F	G