PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d1fwoa-  (   1 )    dhvçddnfsçpagstÇssafgfrnlslvWgçspve
d1i8xa-  (   1 )    vihçdaatiÇpdgttçsl-spy----gvwyçspfs

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1fwoa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1fwoa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Oryzain beta chain	Granulin repeat	Rice (Oryza sativa) [TaxId: 4530]		view
d1i8xa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1i8xa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	N-terminal domain of granulin-1	Granulin repeat	Carp (Cyprinus carpio) [TaxId: 7962]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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D	H	V	C	D	D	N	F	S	C	P	A	G	S	T	C	S	S	A	F	G	F	R	N	L	S	L	V	W	G	C	S	P	V	E
V	I	H	C	D	A	A	T	I	C	P	D	G	T	T	C	S	L	-	S	P	Y	-	-	-	-	G	V	W	Y	C	S	P	F	S

Member	Chain	UniProtKB	GO term

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D	H	V	C	D	D	N	F	S	C	P	A	G	S	T	C	S	S	A	F	G	F	R	N	L	S	L	V	W	G	C	S	P	V	E
V	I	H	C	D	A	A	T	I	C	P	D	G	T	T	C	S	L	-	S	P	Y	-	-	-	-	G	V	W	Y	C	S	P	F	S

									10										20										30
D	H	V	C	D	D	N	F	S	C	P	A	G	S	T	C	S	S	A	F	G	F	R	N	L	S	L	V	W	G	C	S	P	V	E
V	I	H	C	D	A	A	T	I	C	P	D	G	T	T	C	S	L	-	S	P	Y	-	-	-	-	G	V	W	Y	C	S	P	F	S

									10										20										30
D	H	V	C	D	D	N	F	S	C	P	A	G	S	T	C	S	S	A	F	G	F	R	N	L	S	L	V	W	G	C	S	P	V	E
V	I	H	C	D	A	A	T	I	C	P	D	G	T	T	C	S	L	-	S	P	Y	-	-	-	-	G	V	W	Y	C	S	P	F	S