PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1bx7a-  (   3 )    gntÇgge-tçsa---Aqvçlk---gçvçnevhÇrirÇkyglkkdengÇey
d1deca-  (   1 )    ap----rlpqÇqgddqekÇlÇn-kdeÇppg-qÇrfprgdadpyçe     
d1e0fi-  (   1 )    irfgmgkvpÇpdgeVgytÇDÇg-ekiÇlygqsÇn----------dgqÇsg
d1skza1  (   7 )      gÇeea-gÇpe---gsaçniitdrçtÇsgvrçrvhÇphgfqrsryGçe-
d2pw8i1  (   3 )           ytdÇtesgQNlÇlÇegsnvÇgqgnkÇilgsdgeknqçvtgeGt
                                              b                       

                             60       
d1bx7a-  (  47 )    pçsçak---------a  
d1deca-                               
d1e0fi-  (  40 )    dpkpssefeefeideeek
d1skza1  (  50 )    fçkçrl---------epm
d2pw8i1  (  46 )    pkpqsgdfeeipeelq

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1bx7a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1bx7a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hirustasin	Huristasin-like	Medicinal leech (Hirudo medicinalis) [TaxId: 6421]	view
d1deca- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1deca- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Decorsin	Hirudin-like	North american leech (Macrobdella decora) [TaxId: 6405]	view
d1e0fi- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1e0fi- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Haemadin	Hirudin-like	Indian leech (Haemadipsa sylvestris) [TaxId: 13555]	view
d1skza1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1skza1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Factor Xa inhibitor antistasin	Huristasin-like	Mexican leech (Haementeria officinalis) [TaxId: 6410]	view
d2pw8i1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2pw8i1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Hirudin-like	Medicinal leech (Hirudo medicinalis) [TaxId: 6421]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	N	T	C	G	G	E	-	T	C	S	A	-	-	-	A	Q	V	C	L	K	-	-	-	G	C	V	C	N	E	V	H	C	R	I	R	C	K	Y	G	L	K	K	D	E	N	G	C	E	Y	P	C	S	C	A	K	-	-	-	-	-	-	-	-	-	A	-	-
A	P	-	-	-	-	R	L	P	Q	C	Q	G	D	D	Q	E	K	C	L	C	N	-	K	D	E	C	P	P	G	-	Q	C	R	F	P	R	G	D	A	D	P	Y	C	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
I	R	F	G	M	G	K	V	P	C	P	D	G	E	V	G	Y	T	C	D	C	G	-	E	K	I	C	L	Y	G	Q	S	C	N	-	-	-	-	-	-	-	-	-	-	D	G	Q	C	S	G	D	P	K	P	S	S	E	F	E	E	F	E	I	D	E	E	E	K
-	-	G	C	E	E	A	-	G	C	P	E	-	-	-	G	S	A	C	N	I	I	T	D	R	C	T	C	S	G	V	R	C	R	V	H	C	P	H	G	F	Q	R	S	R	Y	G	C	E	-	F	C	K	C	R	L	-	-	-	-	-	-	-	-	-	E	P	M
-	-	-	-	-	-	-	Y	T	D	C	T	E	S	G	Q	N	L	C	L	C	E	G	S	N	V	C	G	Q	G	N	K	C	I	L	G	S	D	G	E	K	N	Q	C	V	T	G	E	G	T	P	K	P	Q	S	G	D	F	E	E	I	P	E	E	L	Q	-	-

Member	Chain	UniProtKB	GO term
d1bx7a_	A	P80302	GO:0004857
d1bx7a_	A	P80302	GO:0004867
d1bx7a_	A	P80302	GO:0005576
d1bx7a_	A	P80302	GO:0008201
d1bx7a_	A	P80302	GO:0010466
d1bx7a_	A	P80302	GO:0050819
d1deca_	A	P17350	GO:0004857
d1deca_	A	P17350	GO:0005576
d1deca_	A	P17350	GO:0007155
d1e0fi_	I	P00734	GO:0004857
d1e0fi_	I	P00734	GO:0004867
d1e0fi_	I	P00734	GO:0010466
d1e0fi_	I	Q25163	GO:0004857
d1e0fi_	I	Q25163	GO:0004867
d1e0fi_	I	Q25163	GO:0010466
d1skza1	A	P15358	GO:0004857
d1skza1	A	P15358	GO:0004867
d1skza1	A	P15358	GO:0005576
d1skza1	A	P15358	GO:0008201
d1skza1	A	P15358	GO:0010466
d1skza1	A	P15358	GO:0050819

									10										20										30										40										50										60
G	N	T	C	G	G	E	-	T	C	S	A	-	-	-	A	Q	V	C	L	K	-	-	-	G	C	V	C	N	E	V	H	C	R	I	R	C	K	Y	G	L	K	K	D	E	N	G	C	E	Y	P	C	S	C	A	K	-	-	-	-	-	-	-	-	-	A	-	-
A	P	-	-	-	-	R	L	P	Q	C	Q	G	D	D	Q	E	K	C	L	C	N	-	K	D	E	C	P	P	G	-	Q	C	R	F	P	R	G	D	A	D	P	Y	C	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
I	R	F	G	M	G	K	V	P	C	P	D	G	E	V	G	Y	T	C	D	C	G	-	E	K	I	C	L	Y	G	Q	S	C	N	-	-	-	-	-	-	-	-	-	-	D	G	Q	C	S	G	D	P	K	P	S	S	E	F	E	E	F	E	I	D	E	E	E	K
-	-	G	C	E	E	A	-	G	C	P	E	-	-	-	G	S	A	C	N	I	I	T	D	R	C	T	C	S	G	V	R	C	R	V	H	C	P	H	G	F	Q	R	S	R	Y	G	C	E	-	F	C	K	C	R	L	-	-	-	-	-	-	-	-	-	E	P	M
-	-	-	-	-	-	-	Y	T	D	C	T	E	S	G	Q	N	L	C	L	C	E	G	S	N	V	C	G	Q	G	N	K	C	I	L	G	S	D	G	E	K	N	Q	C	V	T	G	E	G	T	P	K	P	Q	S	G	D	F	E	E	I	P	E	E	L	Q	-	-

									10										20										30										40										50										60
G	N	T	C	G	G	E	-	T	C	S	A	-	-	-	A	Q	V	C	L	K	-	-	-	G	C	V	C	N	E	V	H	C	R	I	R	C	K	Y	G	L	K	K	D	E	N	G	C	E	Y	P	C	S	C	A	K	-	-	-	-	-	-	-	-	-	A	-	-
A	P	-	-	-	-	R	L	P	Q	C	Q	G	D	D	Q	E	K	C	L	C	N	-	K	D	E	C	P	P	G	-	Q	C	R	F	P	R	G	D	A	D	P	Y	C	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
I	R	F	G	M	G	K	V	P	C	P	D	G	E	V	G	Y	T	C	D	C	G	-	E	K	I	C	L	Y	G	Q	S	C	N	-	-	-	-	-	-	-	-	-	-	D	G	Q	C	S	G	D	P	K	P	S	S	E	F	E	E	F	E	I	D	E	E	E	K
-	-	G	C	E	E	A	-	G	C	P	E	-	-	-	G	S	A	C	N	I	I	T	D	R	C	T	C	S	G	V	R	C	R	V	H	C	P	H	G	F	Q	R	S	R	Y	G	C	E	-	F	C	K	C	R	L	-	-	-	-	-	-	-	-	-	E	P	M
-	-	-	-	-	-	-	Y	T	D	C	T	E	S	G	Q	N	L	C	L	C	E	G	S	N	V	C	G	Q	G	N	K	C	I	L	G	S	D	G	E	K	N	Q	C	V	T	G	E	G	T	P	K	P	Q	S	G	D	F	E	E	I	P	E	E	L	Q	-	-

									10										20										30										40										50										60
G	N	T	C	G	G	E	-	T	C	S	A	-	-	-	A	Q	V	C	L	K	-	-	-	G	C	V	C	N	E	V	H	C	R	I	R	C	K	Y	G	L	K	K	D	E	N	G	C	E	Y	P	C	S	C	A	K	-	-	-	-	-	-	-	-	-	A	-	-
A	P	-	-	-	-	R	L	P	Q	C	Q	G	D	D	Q	E	K	C	L	C	N	-	K	D	E	C	P	P	G	-	Q	C	R	F	P	R	G	D	A	D	P	Y	C	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
I	R	F	G	M	G	K	V	P	C	P	D	G	E	V	G	Y	T	C	D	C	G	-	E	K	I	C	L	Y	G	Q	S	C	N	-	-	-	-	-	-	-	-	-	-	D	G	Q	C	S	G	D	P	K	P	S	S	E	F	E	E	F	E	I	D	E	E	E	K
-	-	G	C	E	E	A	-	G	C	P	E	-	-	-	G	S	A	C	N	I	I	T	D	R	C	T	C	S	G	V	R	C	R	V	H	C	P	H	G	F	Q	R	S	R	Y	G	C	E	-	F	C	K	C	R	L	-	-	-	-	-	-	-	-	-	E	P	M
-	-	-	-	-	-	-	Y	T	D	C	T	E	S	G	Q	N	L	C	L	C	E	G	S	N	V	C	G	Q	G	N	K	C	I	L	G	S	D	G	E	K	N	Q	C	V	T	G	E	G	T	P	K	P	Q	S	G	D	F	E	E	I	P	E	E	L	Q	-	-