PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1udka-  (   1 )    neksgsçPdmsmpipplgiçktlÇnsdsgÇpnvqKÇçkngçgfmtÇttpv
d2z7fi-  (  58 )    rrkpgkçpvtygqçlmlnp-pnfÇemDgqÇkrdlKÇÇmgmç-Gksçvspv
                                                      bbb       bbb   

                      
d1udka-  (  51 )    p 
d2z7fi-  ( 106 )    ka

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1udka- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1udka- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Nawaprin	Elafin-like	Spitting cobra (Naja nigricollis) [TaxId: 8654]		view
d2z7fi- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2z7fi- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50
N	E	K	S	G	S	C	P	D	M	S	M	P	I	P	P	L	G	I	C	K	T	L	C	N	S	D	S	G	C	P	N	V	Q	K	C	C	K	N	G	C	G	F	M	T	C	T	T	P	V	P	-
R	R	K	P	G	K	C	P	V	T	Y	G	Q	C	L	M	L	N	P	-	P	N	F	C	E	M	D	G	Q	C	K	R	D	L	K	C	C	M	G	M	C	-	G	K	S	C	V	S	P	V	K	A

Member	Chain	UniProtKB	GO term
d1udka_	A	P60589	GO:0005576
d1udka_	A	P60589	GO:0030414
d1udka_	A	P60589	GO:0042742
d1udka_	A	P60589	GO:0044278

									10										20										30										40										50
N	E	K	S	G	S	C	P	D	M	S	M	P	I	P	P	L	G	I	C	K	T	L	C	N	S	D	S	G	C	P	N	V	Q	K	C	C	K	N	G	C	G	F	M	T	C	T	T	P	V	P	-
R	R	K	P	G	K	C	P	V	T	Y	G	Q	C	L	M	L	N	P	-	P	N	F	C	E	M	D	G	Q	C	K	R	D	L	K	C	C	M	G	M	C	-	G	K	S	C	V	S	P	V	K	A

									10										20										30										40										50
N	E	K	S	G	S	C	P	D	M	S	M	P	I	P	P	L	G	I	C	K	T	L	C	N	S	D	S	G	C	P	N	V	Q	K	C	C	K	N	G	C	G	F	M	T	C	T	T	P	V	P	-
R	R	K	P	G	K	C	P	V	T	Y	G	Q	C	L	M	L	N	P	-	P	N	F	C	E	M	D	G	Q	C	K	R	D	L	K	C	C	M	G	M	C	-	G	K	S	C	V	S	P	V	K	A

									10										20										30										40										50
N	E	K	S	G	S	C	P	D	M	S	M	P	I	P	P	L	G	I	C	K	T	L	C	N	S	D	S	G	C	P	N	V	Q	K	C	C	K	N	G	C	G	F	M	T	C	T	T	P	V	P	-
R	R	K	P	G	K	C	P	V	T	Y	G	Q	C	L	M	L	N	P	-	P	N	F	C	E	M	D	G	Q	C	K	R	D	L	K	C	C	M	G	M	C	-	G	K	S	C	V	S	P	V	K	A