PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2fj8a1  (  65 )    PweçÇdkaiçtrsnpptÇrÇvdevk-kÇaptÇktçlpSrsrpsrrvÇids
d2g81i1  (  17 )      pçÇdrçeçtksippqÇrÇsdvrlnsÇHsaÇksçaçtfsipaqÇfÇgdi
                           bbb       bbb              bbb       bbb   

                             60  
d2fj8a1  ( 114 )    yfgpvpprçt
d2g81i1  (  65 )    nd-fçykpç

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2fj8a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2fj8a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Bowman-Birk inhibitor, BBI	Barley (Hordeum vulgare) [TaxId: 4513]		view
d2g81i1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2g81i1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Bowman-Birk inhibitor, BBI	Bowman-Birk inhibitor, BBI	Cowpea (Vigna unguiculata) [TaxId: 3917]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	W	E	C	C	D	K	A	I	C	T	R	S	N	P	P	T	C	R	C	V	D	E	V	K	-	K	C	A	P	T	C	K	T	C	L	P	S	R	S	R	P	S	R	R	V	C	I	D	S	Y	F	G	P	V	P	P	R	C	T
-	-	P	C	C	D	R	C	E	C	T	K	S	I	P	P	Q	C	R	C	S	D	V	R	L	N	S	C	H	S	A	C	K	S	C	A	C	T	F	S	I	P	A	Q	C	F	C	G	D	I	N	D	-	F	C	Y	K	P	C	-

Member	Chain	UniProtKB	GO term
d2fj8a1	A	P12940	GO:0004867
d2fj8a1	A	P12940	GO:0005576
d2g81i1	I	P00760	GO:0005576
d2g81i1	I	P00760	GO:0004867
d2g81i1	I	Q9S9H8	GO:0005576
d2g81i1	I	Q9S9H8	GO:0004867

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P	W	E	C	C	D	K	A	I	C	T	R	S	N	P	P	T	C	R	C	V	D	E	V	K	-	K	C	A	P	T	C	K	T	C	L	P	S	R	S	R	P	S	R	R	V	C	I	D	S	Y	F	G	P	V	P	P	R	C	T
-	-	P	C	C	D	R	C	E	C	T	K	S	I	P	P	Q	C	R	C	S	D	V	R	L	N	S	C	H	S	A	C	K	S	C	A	C	T	F	S	I	P	A	Q	C	F	C	G	D	I	N	D	-	F	C	Y	K	P	C	-

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P	W	E	C	C	D	K	A	I	C	T	R	S	N	P	P	T	C	R	C	V	D	E	V	K	-	K	C	A	P	T	C	K	T	C	L	P	S	R	S	R	P	S	R	R	V	C	I	D	S	Y	F	G	P	V	P	P	R	C	T
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