PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1lpba1  (   6 )                 giiinLdegelÇlnsaqÇks-ncÇq-h----dtilsl
d1lpba2  (  45 )    enseÇSaf---Tlyg---vyykcpÇe------rgltçegdkslvgsitnt
d2kraa1  (   1 )                 a-----vitgaÇdkdvqÇgsgtcÇaaS----awsrni
d2kraa2  (  37 )    sgedÇhpashkvpydgkrlsslcpÇk------sgltçsksg--------e
                                                       bbb            

                            
d1lpba1  (  37 )    srÇalkar
d1lpba2  (  83 )    nfgiçhnv
d2kraa1  (  29 )    rfçiplgn
d2kraa2  (  73 )    kfkÇs   
                     bbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1lpba1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1lpba1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	(Pro)colipase	Colipase-like	Pig (Sus scrofa) [TaxId: 9823]	view
d1lpba2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1lpba2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	(Pro)colipase	Colipase-like	Pig (Sus scrofa) [TaxId: 9823]	view
d2kraa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2kraa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bombina variegata [TaxId: 8348]	view
d2kraa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2kraa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bombina variegata [TaxId: 8348]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	N	S	E	C	S	A	F	-	-	-	T	L	Y	G	-	-	-	V	Y	Y	K	C	P	C	E	-	-	-	-	-	-	R	G	L	T	C	E	G	D	K	S	L	V	G	S	I	T	N	T	N	F	G	I	C	H	N	V
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S	G	E	D	C	H	P	A	S	H	K	V	P	Y	D	G	K	R	L	S	S	L	C	P	C	K	-	-	-	-	-	-	S	G	L	T	C	S	K	S	G	-	-	-	-	-	-	-	-	E	K	F	K	C	S	-	-	-

Member	Chain	UniProtKB	GO term
d1lpba1	A	P02703	GO:0005576
d1lpba1	A	P02703	GO:0007586
d1lpba1	A	P02703	GO:0008047
d1lpba1	A	P02703	GO:0016042
d1lpba1	A	P02703	GO:0032094
d1lpba1	A	P02703	GO:0035473
d1lpba1	A	P02703	GO:0043085
d1lpba1	A	P16233	GO:0005576
d1lpba1	A	P16233	GO:0007586
d1lpba1	A	P16233	GO:0008047
d1lpba1	A	P16233	GO:0016042
d1lpba1	A	P16233	GO:0032094
d1lpba1	A	P16233	GO:0035473
d1lpba1	A	P16233	GO:0043085
d1lpba1	A	P02703	GO:0005576
d1lpba1	A	P02703	GO:0007586
d1lpba1	A	P02703	GO:0008047
d1lpba1	A	P02703	GO:0016042
d1lpba1	A	P02703	GO:0032094
d1lpba1	A	P02703	GO:0035473
d1lpba1	A	P02703	GO:0043085
d1lpba1	A	P16233	GO:0005576
d1lpba1	A	P16233	GO:0007586
d1lpba1	A	P16233	GO:0008047
d1lpba1	A	P16233	GO:0016042
d1lpba1	A	P16233	GO:0032094
d1lpba1	A	P16233	GO:0035473
d1lpba1	A	P16233	GO:0043085
d1lpba2	A	P02703	GO:0005576
d1lpba2	A	P02703	GO:0007586
d1lpba2	A	P02703	GO:0008047
d1lpba2	A	P02703	GO:0016042
d1lpba2	A	P02703	GO:0032094
d1lpba2	A	P02703	GO:0035473
d1lpba2	A	P02703	GO:0043085
d1lpba2	A	P16233	GO:0005576
d1lpba2	A	P16233	GO:0007586
d1lpba2	A	P16233	GO:0008047
d1lpba2	A	P16233	GO:0016042
d1lpba2	A	P16233	GO:0032094
d1lpba2	A	P16233	GO:0035473
d1lpba2	A	P16233	GO:0043085
d1lpba2	A	P02703	GO:0005576
d1lpba2	A	P02703	GO:0007586
d1lpba2	A	P02703	GO:0008047
d1lpba2	A	P02703	GO:0016042
d1lpba2	A	P02703	GO:0032094
d1lpba2	A	P02703	GO:0035473
d1lpba2	A	P02703	GO:0043085
d1lpba2	A	P16233	GO:0005576
d1lpba2	A	P16233	GO:0007586
d1lpba2	A	P16233	GO:0008047
d1lpba2	A	P16233	GO:0016042
d1lpba2	A	P16233	GO:0032094
d1lpba2	A	P16233	GO:0035473
d1lpba2	A	P16233	GO:0043085

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E	N	S	E	C	S	A	F	-	-	-	T	L	Y	G	-	-	-	V	Y	Y	K	C	P	C	E	-	-	-	-	-	-	R	G	L	T	C	E	G	D	K	S	L	V	G	S	I	T	N	T	N	F	G	I	C	H	N	V
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S	G	E	D	C	H	P	A	S	H	K	V	P	Y	D	G	K	R	L	S	S	L	C	P	C	K	-	-	-	-	-	-	S	G	L	T	C	S	K	S	G	-	-	-	-	-	-	-	-	E	K	F	K	C	S	-	-	-

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E	N	S	E	C	S	A	F	-	-	-	T	L	Y	G	-	-	-	V	Y	Y	K	C	P	C	E	-	-	-	-	-	-	R	G	L	T	C	E	G	D	K	S	L	V	G	S	I	T	N	T	N	F	G	I	C	H	N	V
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S	G	E	D	C	H	P	A	S	H	K	V	P	Y	D	G	K	R	L	S	S	L	C	P	C	K	-	-	-	-	-	-	S	G	L	T	C	S	K	S	G	-	-	-	-	-	-	-	-	E	K	F	K	C	S	-	-	-