PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1lsha2  (  18 )               FqpgkVYrYsYdafsIsglpepgvnraglsgeMkIeIhG
d1lsha3  ( 621 )    cryskavhvdtfnartmagvsadyfriNS-psgplpravaakirgqgm--
                                     bbbbbbbbbbbb      bbbbbbbbbbbb   

                             60        70        80        90        100 
d1lsha2  (  57 )    hthnqAtLkItqVnlkyF-----lgpwpsdsfypltggydhfiqqLevpV
d1lsha3  ( 668 )    --g---yasdivefGlraeglQellyd--wksvpe---------erplas
                          bbbbbbbbbbb                                b

                             110       120       130       140       150 
d1lsha2  ( 102 )    RFdysagrIgdIyAppqVtdtAVNiVRgILNLFQLsLkknqqtfelqEtG
d1lsha3  ( 741 )    gyvkvhgqevvfaeldkkmqeqigavVskle----------qgmdvlltk
                    bbbbb  bbbbbb       aaaaaaaaaaa            bbbbbbb

                             160       170       180       190       200 
d1lsha2  ( 152 )    veGiCqTtYvvqegyr---tnemaVvKtKdLnnCdhkvy-ktmgtayae-
d1lsha3  ( 799 )    ---gyvvsevrymqpvcigipmDlnllvsGvttnranlsAsFs------s
                       bbbbbbbbbb        bbbbbbbbbbbbbbbb             

                             210       220       230       240       250 
d1lsha2  ( 197 )    ----rçptçqkm-----nkn---lrStAvYnYaIfdepsgyiIksAhSee
d1lsha3  ( 841 )    lpadmkladllatnielrvaattsmsqhavaimglttd-lakagmqthyk
                          aaaa             bbbbbbbbbbbbb     bbbbbbbbb

                             260       270       280       290       300 
d1lsha2  ( 235 )    iqqlSv------fdike-------------gnvviesrqkLiLeg----i
d1lsha3  ( 890 )    tsaglgvngkiemnaresnfkaslkpfqqktvvvlstMeSivFvrdpsgs
                    bbbb                            bbbbbbbbbbbbb    b

                             310       320       330       340       350 
d1lsha2  ( 262 )    qsap----------------------------------------------
d1lsha3  ( 940 )    rilpvLppkmtqkqihdimtarPvmrrkqscsksaalsskvCfsarlrNA
                    bb                                                

                             360       370       380       390 
d1lsha2  ( 266 )    -----------aasqaAsl-------qnrggLmykfp   
d1lsha3  (1034 )    afirnallykitGdyvskvyvqptsskaqitkvelelqag

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1lsha2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1lsha2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Lipovitellin-phosvitin complex; beta-sheet shell regions	Lipovitellin-phosvitin complex; beta-sheet shell regions	Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]		view
d1lsha3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1lsha3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Lipovitellin-phosvitin complex; beta-sheet shell regions	Lipovitellin-phosvitin complex; beta-sheet shell regions	Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]		view

Domain ID	Name
d1lshb-	1lsh B:

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1lsha2	A	Q91062	GO:0005319
d1lsha2	A	Q91062	GO:0006869
d1lsha2	A	Q91062	GO:0005319
d1lsha2	A	Q91062	GO:0006869
d1lsha2	A	Q91062	GO:0005319
d1lsha2	A	Q91062	GO:0006869
d1lsha2	A	Q91062	GO:0005319
d1lsha2	A	Q91062	GO:0006869
d1lsha3	A	Q91062	GO:0005319
d1lsha3	A	Q91062	GO:0006869
d1lsha3	A	Q91062	GO:0005319
d1lsha3	A	Q91062	GO:0006869
d1lsha3	A	Q91062	GO:0005319
d1lsha3	A	Q91062	GO:0006869
d1lsha3	A	Q91062	GO:0005319
d1lsha3	A	Q91062	GO:0006869

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C	R	Y	S	K	A	V	H	V	D	T	F	N	A	R	T	M	A	G	V	S	A	D	Y	F	R	I	N	S	-	P	S	G	P	L	P	R	A	V	A	A	K	I	R	G	Q	G	M	-	-	-	-	G	-	-	-	Y	A	S	D	I	V	E	F	G	L	R	A	E	G	L	Q	E	L	L	Y	D	-	-	W	K	S	V	P	E	-	-	-	-	-	-	-	-	-	E	R	P	L	A	S	G	Y	V	K	V	H	G	Q	E	V	V	F	A	E	L	D	K	K	M	Q	E	Q	I	G	A	V	V	S	K	L	E	-	-	-	-	-	-	-	-	-	-	Q	G	M	D	V	L	L	T	K	-	-	-	G	Y	V	V	S	E	V	R	Y	M	Q	P	V	C	I	G	I	P	M	D	L	N	L	L	V	S	G	V	T	T	N	R	A	N	L	S	A	S	F	S	-	-	-	-	-	-	S	L	P	A	D	M	K	L	A	D	L	L	A	T	N	I	E	L	R	V	A	A	T	T	S	M	S	Q	H	A	V	A	I	M	G	L	T	T	D	-	L	A	K	A	G	M	Q	T	H	Y	K	T	S	A	G	L	G	V	N	G	K	I	E	M	N	A	R	E	S	N	F	K	A	S	L	K	P	F	Q	Q	K	T	V	V	V	L	S	T	M	E	S	I	V	F	V	R	D	P	S	G	S	R	I	L	P	V	L	P	P	K	M	T	Q	K	Q	I	H	D	I	M	T	A	R	P	V	M	R	R	K	Q	S	C	S	K	S	A	A	L	S	S	K	V	C	F	S	A	R	L	R	N	A	A	F	I	R	N	A	L	L	Y	K	I	T	G	D	Y	V	S	K	V	Y	V	Q	P	T	S	S	K	A	Q	I	T	K	V	E	L	E	L	Q	A	G

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